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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32227-RA through 18771 annotations produced 2 hits



golden goal (gogo):

Annotation Number : CG32227
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052227
Gbrowse : chr3L:20261958-20288231 (-) // 100.0 //
Probeset : 1625852_at
Accessions : protein= NP_649200;, nucleotide= NM_140943;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // not recorded /// 0030424
Interpro : 0004872 // receptor activity // inferred from mutant phenotype
FlyMine data for FBgn0052227.
Homophila reports that CG32227 is a close match (4e-11) to human gene THBS2 (NP_003238), a gene associated with {Lumbar disc herniation, susceptibility to}, 603932 (3).
BioGrid reports that CG32227 interacts with CG9511 .
VDRC has 2 RNAi stocks for FBgn0052227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 74 of 426.30Up
Head58 74 of 4 6.70Up
Eye43 34 of 4 5.03Up
Thoracicoabdominal ganglion184 44 of 421.20Up
Salivary gland8 11 of 4 0.92None
Crop7 13 of 4 0.80None
Midgut2 00 of 4 0.30Down
Tubule5 00 of 4 0.60Down
Hindgut1 00 of 4 0.20Down
Heart4 12 of 4 0.55None
Fat body6 23 of 4 0.74None
Ovary2 10 of 4 0.30Down
Testis5 12 of 4 0.60None
Male accessory glands9 12 of 4 1.00None
Virgin spermatheca4 11 of 4 0.56None
Mated spermatheca4 02 of 4 0.50None
Adult carcass10 22 of 4 1.20None
Larval CNS559 684 of 464.32Up
Larval Salivary gland1 00 of 4 0.22Down
Larval midgut3 10 of 4 0.37Down
Larval tubule3 10 of 4 0.40None
Larval hindgut3 00 of 4 0.40Down
Larval fat body2 10 of 4 0.30Down
Larval trachea3 21 of 4 0.36Down
Larval carcass5 11 of 4 0.62None
S2 cells (growing)6 04 of 4 0.74None
Whole fly8 14 of 4



golden goal (gogo):

Annotation Number : S.C3L002551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052227
Gbrowse : chr3L:20270729-20271678 (-) // 99.16 //
Probeset : 1628045_s_at
Accessions : protein= NP_649200;, nucleotide= NM_140943;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0016021 // integral to membrane // not recorded /// 0030424
Interpro : 0004872 // receptor activity // inferred from mutant phenotype
FlyMine data for FBgn0052227.
VDRC has 2 RNAi stocks for FBgn0052227 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 13 of 4 1.60None
Head10 12 of 4 2.20Up
Eye4 10 of 4 0.85None
Thoracicoabdominal ganglion6 12 of 4 1.40None
Salivary gland13 10 of 4 2.79Up
Crop6 21 of 4 1.30None
Midgut4 10 of 4 0.80None
Tubule5 10 of 4 1.10None
Hindgut6 20 of 4 1.20None
Heart2 10 of 4 0.59None
Fat body10 62 of 4 2.20None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.30None
Male accessory glands2 00 of 4 0.50None
Virgin spermatheca6 21 of 4 1.36None
Mated spermatheca7 11 of 4 1.43None
Adult carcass4 20 of 4 0.80None
Larval CNS6 12 of 4 1.39None
Larval Salivary gland3 10 of 4 0.61None
Larval midgut5 10 of 4 1.05None
Larval tubule7 11 of 4 1.60None
Larval hindgut2 10 of 4 0.55None
Larval fat body6 10 of 4 1.40None
Larval trachea1 10 of 4 0.37None
Larval carcass6 20 of 4 1.27None
S2 cells (growing)4 10 of 4 1.00None
Whole fly4 10 of 4

Looking for CG32227-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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