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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32237-RA through 18771 annotations produced 1 hits



(CG32237):

Annotation Number : CG32237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052237
Gbrowse : chr3L:4849434-4852455 (-) // 100.0 //
Probeset : 1632595_at
Accessions : protein= NP_729037;, nucleotide= NM_168104;
FlyMine data for FBgn0052237.
BDGP gene expression has embryonic in situ data for CG32237: 10 pix of staining in 3 body parts.
VDRC has 3 RNAi stocks for FBgn0052237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 1.30None
Head3 ± 10 of 4 0.50None
Eye2 ± 00 of 4 0.46None
Thoracicoabdominal ganglion10 ± 00 of 4 1.70Up
Salivary gland4 ± 20 of 4 0.71None
Crop3 ± 00 of 4 0.50None
Midgut5 ± 20 of 4 0.90None
Tubule7 ± 00 of 4 1.10None
Hindgut2 ± 10 of 4 0.40None
Heart2 ± 00 of 4 0.46None
Fat body1 ± 00 of 4 0.23Down
Ovary3 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.30Down
Male accessory glands2 ± 00 of 4 0.30Down
Virgin spermatheca1 ± 00 of 4 0.15Down
Mated spermatheca1 ± 00 of 4 0.21Down
Adult carcass1 ± 00 of 4 0.20Down
Larval CNS13 ± 23 of 4 2.17Up
Larval Salivary gland3 ± 10 of 4 0.46None
Larval midgut1 ± 00 of 4 0.27Down
Larval tubule24 ± 24 of 4 3.80Up
Larval hindgut3 ± 10 of 4 0.54None
Larval fat body9 ± 20 of 4 1.50None
Larval trachea3 ± 20 of 4 0.51None
Larval carcass4 ± 10 of 4 0.64None
S2 cells (growing)2 ± 00 of 4 0.39Down
Whole fly6 ± 10 of 4

Looking for CG32237-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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