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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32239-RA through 18771 annotations produced 1 hits



Guanine nucleotide exchange factor GEF64C (Gef64C):

Annotation Number : CG32239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035574
Gbrowse : chr3L:4692797-4796254 (+) // 100.0 //
Probeset : 1623087_at
Accessions : protein= NP_729032;, nucleotide= NM_168102;
Pathway : open tracheal system // inferred from genetic interaction"
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0035574.
BDGP gene expression has embryonic in situ data for Gef64C: 22 pix of staining in 13 body parts.
BioGrid reports that CG32239 interacts with CG3978 .
TRiP has 1 RNAi stocks for FBgn0035574 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035574 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.30Down
Head28 ± 24 of 4 2.10Up
Eye131 ± 94 of 4 9.61Up
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland52 ± 84 of 4 3.86Up
Crop8 ± 10 of 4 0.60None
Midgut2 ± 10 of 4 0.20Down
Tubule13 ± 12 of 4 1.00None
Hindgut63 ± 44 of 4 4.60Up
Heart2 ± 00 of 4 0.18Down
Fat body2 ± 20 of 4 0.17Down
Ovary15 ± 14 of 4 1.20None
Testis7 ± 04 of 4 0.60Down
Male accessory glands79 ± 64 of 4 5.80Up
Virgin spermatheca5 ± 10 of 4 0.42Down
Mated spermatheca7 ± 22 of 4 0.56None
Adult carcass13 ± 11 of 4 1.00None
Larval CNS2 ± 20 of 4 0.19Down
Larval Salivary gland9 ± 21 of 4 0.68None
Larval midgut10 ± 20 of 4 0.79None
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut113 ± 124 of 4 8.30Up
Larval fat body3 ± 10 of 4 0.30Down
Larval trachea92 ± 74 of 4 6.72Up
Larval carcass250 ± 234 of 418.28Up
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly13 ± 14 of 4

Looking for CG32239-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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