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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32253-RA through 18771 annotations produced 1 hits



(CG11583):

Annotation Number : CG32253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035524
Gbrowse : chr3L:4281503-4282798 (-) // 100.0 //
Probeset : 1624779_at
Accessions : protein= NP_001033989;, nucleotide= NM_001038900;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
Interpro : 0004812 // aminoacyl-tRNA ligase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred
FlyMine data for FBgn0035524.
BioGrid reports that CG32253 interacts with CG4697 .
VDRC has 2 RNAi stocks for FBgn0035524 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 14 of 4 0.40Down
Head64 44 of 4 0.30Down
Eye59 24 of 4 0.26Down
Thoracicoabdominal ganglion80 54 of 4 0.40Down
Salivary gland51 64 of 4 0.23Down
Crop71 44 of 4 0.30Down
Midgut64 54 of 4 0.30Down
Tubule62 104 of 4 0.30Down
Hindgut48 24 of 4 0.20Down
Heart91 84 of 4 0.41Down
Fat body83 114 of 4 0.37Down
Ovary391 44 of 4 1.70Up
Testis53 44 of 4 0.20Down
Male accessory glands143 64 of 4 0.60Down
Virgin spermatheca85 64 of 4 0.38Down
Mated spermatheca148 74 of 4 0.66Down
Adult carcass50 64 of 4 0.20Down
Larval CNS206 94 of 4 0.92None
Larval Salivary gland141 54 of 4 0.63Down
Larval midgut34 44 of 4 0.15Down
Larval tubule30 14 of 4 0.10Down
Larval hindgut75 104 of 4 0.34Down
Larval fat body31 04 of 4 0.10Down
Larval trachea256 344 of 4 1.15None
Larval carcass119 354 of 4 0.53None
S2 cells (growing)188 34 of 4 0.84None
Whole fly224 124 of 4

Looking for CG32253-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime