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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32260-RA through 18771 annotations produced 1 hits



(CG32260):

Annotation Number : CG32260
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052260
Gbrowse : chr3L:4143091-4145852 (+) // 100.0 //
Probeset : 1625067_at
Accessions : protein= NP_728942;, nucleotide= NM_168065;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052260.
Homophila reports that CG32260 is a close match (9e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
VDRC has 3 RNAi stocks for FBgn0052260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 2.20None
Head8 ± 00 of 410.10Up
Eye3 ± 10 of 4 4.61None
Thoracicoabdominal ganglion6 ± 21 of 4 7.90None
Salivary gland5 ± 20 of 4 7.06None
Crop1 ± 00 of 4 1.90None
Midgut4 ± 20 of 4 5.80None
Tubule2 ± 00 of 4 2.80Up
Hindgut1 ± 00 of 4 2.10None
Heart3 ± 00 of 4 3.82None
Fat body1 ± 00 of 4 2.00None
Ovary3 ± 00 of 4 3.60Up
Testis0 ± 00 of 4 1.10None
Male accessory glands3 ± 10 of 4 4.10None
Virgin spermatheca0 ± 00 of 4 0.97None
Mated spermatheca1 ± 00 of 4 1.55None
Adult carcass4 ± 20 of 4 5.10None
Larval CNS3 ± 20 of 4 4.18None
Larval Salivary gland5 ± 10 of 4 7.06None
Larval midgut1 ± 00 of 4 1.24None
Larval tubule1 ± 00 of 4 2.10None
Larval hindgut3 ± 00 of 4 3.67None
Larval fat body5 ± 10 of 4 6.10None
Larval trachea1 ± 10 of 4 1.79None
Larval carcass5 ± 10 of 4 6.94None
S2 cells (growing)2 ± 00 of 4 3.12None
Whole fly0 ± 00 of 4

Looking for CG32260-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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