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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32268-RA through 18771 annotations produced 1 hits

drosomycin-I (dro6):

Annotation Number : CG32268
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052268
Gbrowse : chr3L:3336143-3336362 (-) // 100.0 //
Probeset : 1625247_at
Accessions : protein= NP_728873;, nucleotide= NM_168028;
FlyMine data for FBgn0052268.
VDRC has 3 RNAi stocks for FBgn0052268 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 1.10None
Head3 00 of 4 4.30Up
Eye1 00 of 4 2.23None
Thoracicoabdominal ganglion1 00 of 4 1.60None
Salivary gland5 20 of 4 6.58None
Crop0 00 of 4 1.20None
Midgut1 00 of 4 1.80None
Tubule3 00 of 4 4.20Up
Hindgut0 00 of 4 0.90None
Heart0 00 of 4 0.65None
Fat body0 00 of 4 0.90None
Ovary0 00 of 4 1.10None
Testis1 00 of 4 1.80None
Male accessory glands2 00 of 4 2.60Up
Virgin spermatheca12 30 of 415.97Up
Mated spermatheca14 10 of 418.81Up
Adult carcass2 00 of 4 3.30Up
Larval CNS0 00 of 4 1.03None
Larval Salivary gland2 00 of 4 2.65None
Larval midgut2 00 of 4 2.52None
Larval tubule1 00 of 4 1.50None
Larval hindgut0 00 of 4 1.03None
Larval fat body2 10 of 4 3.60None
Larval trachea2 30 of 4 3.55None
Larval carcass1 00 of 4 1.29None
S2 cells (growing)0 00 of 4 1.03None
Whole fly0 00 of 4

Looking for CG32268-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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