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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32271-RA through 18771 annotations produced 1 hits



(CG32271):

Annotation Number : CG32271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052271
Gbrowse : chr3L:3202313-3203060 (-) // 100.0 //
Probeset : 1624874_at
Accessions : protein= NP_728833;, nucleotide= NM_168001;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0052271.
Homophila reports that CG32271 is a close match (8e-14) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 1 RNAi stocks for FBgn0052271 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.30Down
Head74 ± 54 of 4 4.50Up
Eye10 ± 13 of 4 0.64Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland20 ± 32 of 4 1.26None
Crop4 ± 01 of 4 0.30Down
Midgut13 ± 13 of 4 0.80None
Tubule10 ± 12 of 4 0.60Down
Hindgut6 ± 11 of 4 0.40Down
Heart9 ± 04 of 4 0.57Down
Fat body13 ± 53 of 4 0.83None
Ovary4 ± 10 of 4 0.30Down
Testis3 ± 00 of 4 0.20Down
Male accessory glands5 ± 11 of 4 0.30Down
Virgin spermatheca10 ± 11 of 4 0.66Down
Mated spermatheca15 ± 14 of 4 0.93None
Adult carcass34 ± 14 of 4 2.10Up
Larval CNS6 ± 21 of 4 0.38Down
Larval Salivary gland5 ± 10 of 4 0.31Down
Larval midgut16 ± 14 of 4 1.01None
Larval tubule7 ± 10 of 4 0.50Down
Larval hindgut6 ± 00 of 4 0.38Down
Larval fat body11 ± 12 of 4 0.70None
Larval trachea5 ± 04 of 4 0.35Down
Larval carcass8 ± 11 of 4 0.49Down
S2 cells (growing)5 ± 00 of 4 0.34Down
Whole fly16 ± 04 of 4

Looking for CG32271-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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