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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32282-RA through 18771 annotations produced 1 hits



drosomycin-F (dro4):

Annotation Number : CG32282
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052282
Gbrowse : chr3L:3315636-3315852 (+) // 100.0 //
Probeset : 1628617_at
Accessions : protein= NP_728862;, nucleotide= NM_168021;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
FlyMine data for FBgn0052282.
VDRC has 3 RNAi stocks for FBgn0052282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 34 of 4 0.00Down
Head3085 ± 2024 of 4 3.00Up
Eye608 ± 1654 of 4 0.59None
Thoracicoabdominal ganglion119 ± 314 of 4 0.10Down
Salivary gland62 ± 82 of 4 0.06Down
Crop38 ± 24 of 4 0.00Down
Midgut43 ± 24 of 4 0.00Down
Tubule24 ± 33 of 4 0.00Down
Hindgut126 ± 124 of 4 0.10Down
Heart244 ± 264 of 4 0.24Down
Fat body188 ± 734 of 4 0.18Down
Ovary13 ± 14 of 4 0.00Down
Testis10 ± 20 of 4 0.00Down
Male accessory glands39 ± 34 of 4 0.00Down
Virgin spermatheca27 ± 44 of 4 0.03Down
Mated spermatheca32 ± 14 of 4 0.03Down
Adult carcass4514 ± 2054 of 4 4.40Up
Larval CNS19 ± 14 of 4 0.02Down
Larval Salivary gland41 ± 23 of 4 0.04Down
Larval midgut33 ± 34 of 4 0.03Down
Larval tubule28 ± 24 of 4 0.00Down
Larval hindgut29 ± 24 of 4 0.03Down
Larval fat body29 ± 33 of 4 0.00Down
Larval trachea31 ± 104 of 4 0.03Down
Larval carcass22 ± 61 of 4 0.02Down
S2 cells (growing)30 ± 14 of 4 0.03Down
Whole fly1032 ± 1164 of 4

Looking for CG32282-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime