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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32296-RA through 18771 annotations produced 1 hits



Myocardin-related transcription factor (Mrtf):

Annotation Number : CG32296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052296
Gbrowse : chr3L:2719688-2766480 (-) // 99.93 //
Probeset : 1636679_at
Accessions : protein= NP_001137878; /// NP_001137879; /// NP_728775;, nucleotide= NM_001144406; /// NM_001144407; /// NM_167965;
Pathway : DNA-dependent // non-traceable author statement /// 0051302 // regulation of cell division // inferred from mutant phen
FlyMine data for FBgn0052296.
BioGrid reports that CG32296 interacts with CG9949 .
TRiP has 2 RNAi stocks for FBgn0052296 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 14 of 4 1.60None
Head14 24 of 4 0.50Down
Eye44 24 of 4 1.63Up
Thoracicoabdominal ganglion32 74 of 4 1.20None
Salivary gland35 32 of 4 1.31None
Crop98 84 of 4 3.60Up
Midgut24 24 of 4 0.90None
Tubule17 03 of 4 0.60Down
Hindgut36 34 of 4 1.40Up
Heart69 34 of 4 2.55Up
Fat body9 31 of 4 0.36Down
Ovary38 34 of 4 1.40Up
Testis27 14 of 4 1.00None
Male accessory glands41 24 of 4 1.50Up
Virgin spermatheca13 13 of 4 0.50Down
Mated spermatheca18 34 of 4 0.66None
Adult carcass25 23 of 4 0.90None
Larval CNS26 64 of 4 0.97None
Larval Salivary gland42 44 of 4 1.57Up
Larval midgut19 14 of 4 0.72Down
Larval tubule23 24 of 4 0.90None
Larval hindgut21 44 of 4 0.79None
Larval fat body20 12 of 4 0.70Down
Larval trachea99 84 of 4 3.66Up
Larval carcass21 24 of 4 0.80None
S2 cells (growing)23 04 of 4 0.87None
Whole fly27 14 of 4

Looking for CG32296-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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