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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3231-RA through 18771 annotations produced 1 hits



CG3231 (snama):

Annotation Number : CG3231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086129
Gbrowse : chr2R:19974128-19979542 (+) // 100.0 //
Probeset : 1625126_at
Accessions : protein= NP_611884;, nucleotide= NM_138040;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from s
FlyMine data for FBgn0086129.
BioGrid reports that CG3231 interacts with CG4104 CG8743 .
VDRC has 1 RNAi stocks for FBgn0086129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 84 of 4 2.30Up
Head33 30 of 4 0.90None
Eye49 44 of 4 1.25None
Thoracicoabdominal ganglion69 04 of 4 1.80Up
Salivary gland44 32 of 4 1.14None
Crop23 33 of 4 0.60Down
Midgut17 50 of 4 0.40Down
Tubule31 13 of 4 0.80Down
Hindgut33 23 of 4 0.80None
Heart27 12 of 4 0.70Down
Fat body20 50 of 4 0.51Down
Ovary81 44 of 4 2.10Up
Testis46 44 of 4 1.20None
Male accessory glands27 24 of 4 0.70Down
Virgin spermatheca16 40 of 4 0.41Down
Mated spermatheca16 10 of 4 0.41Down
Adult carcass25 50 of 4 0.60None
Larval CNS78 44 of 4 1.99Up
Larval Salivary gland25 12 of 4 0.64Down
Larval midgut19 30 of 4 0.49Down
Larval tubule26 23 of 4 0.70Down
Larval hindgut27 13 of 4 0.69Down
Larval fat body18 31 of 4 0.50Down
Larval trachea40 44 of 4 1.03None
Larval carcass33 22 of 4 0.84None
S2 cells (growing)68 44 of 4 1.74Up
Whole fly39 32 of 4

Looking for CG3231-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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