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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32332-RD through 18771 annotations produced 1 hits



/// (CG9130 /// CG9133):

Annotation Number : CG32332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035197 /// FBgn0035198
Gbrowse : chr3L:1252011-1255988 (+) // 100.0 //
Probeset : 1632587_s_at
Accessions : protein= NP_001027092; /// NP_001027093; /// NP_001027094; /// NP_001027095; /// NP_001027096;, nucleotide= NM_001031921; /// NM_001031922; /// NM_001031923; /// NM_001031924; /// NM_001031925;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035197 /// FBgn0035198.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland10 30 of 4 0.02Down
Crop1 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body1 20 of 4 0.00Down
Ovary0 00 of 4 0.00Down
Testis3769 1584 of 4 6.30Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.01Down
Mated spermatheca10 31 of 4 0.02Down
Adult carcass9 30 of 4 0.00Down
Larval CNS2 10 of 4 0.00Down
Larval Salivary gland2 10 of 4 0.00Down
Larval midgut2 10 of 4 0.00Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.00Down
Larval fat body588 3334 of 4 1.00None
Larval trachea18 281 of 4 0.03Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly601 744 of 4

Looking for CG32332-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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