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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32333-RA through 18771 annotations produced 1 hits


Annotation Number : CG32333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052333
Gbrowse : chr3L:1275971-1294285 (+) // 100.0 //
Probeset : 1634669_at
Accessions : protein= NP_001014555; /// NP_728588;, nucleotide= NM_001014555; /// NM_167865;
FlyMine data for FBgn0052333.
VDRC has 2 RNAi stocks for FBgn0052333 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 104 of 421.10Up
Head42 44 of 4 3.70Up
Eye93 94 of 4 8.25Up
Thoracicoabdominal ganglion165 144 of 414.60Up
Salivary gland8 30 of 4 0.73None
Crop24 14 of 4 2.20Up
Midgut13 30 of 4 1.20None
Tubule9 10 of 4 0.80None
Hindgut7 10 of 4 0.60None
Heart9 02 of 4 0.80None
Fat body7 30 of 4 0.70None
Ovary4 00 of 4 0.40Down
Testis4 10 of 4 0.40Down
Male accessory glands13 11 of 4 1.10None
Virgin spermatheca8 10 of 4 0.77None
Mated spermatheca15 41 of 4 1.32None
Adult carcass12 11 of 4 1.10None
Larval CNS48 64 of 4 4.26Up
Larval Salivary gland8 21 of 4 0.72None
Larval midgut15 40 of 4 1.35None
Larval tubule6 11 of 4 0.60None
Larval hindgut11 23 of 4 0.98None
Larval fat body8 11 of 4 0.80None
Larval trachea5 41 of 4 0.45None
Larval carcass82 124 of 4 7.30Up
S2 cells (growing)3 10 of 4 0.34Down
Whole fly11 12 of 4

Looking for CG32333-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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