FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3234-RC through 18771 annotations produced 1 hits

TIMELESS (tim):

Annotation Number : CG3234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014396
Gbrowse : chr2L:3501039-3506741 (-) // 100.0 //
Probeset : 1631468_a_at
Accessions : protein= NP_001014463; /// NP_001033872; /// NP_001137780; /// NP_001137781; /// NP_523468; /// NP_722912; /// NP_722913; /// NP_722914;, nucleotide= NM_001014463; /// NM_001038783; /// NM_001144308; /// NM_001144309; /// NM_078744; /// NM_164540; /// NM_164541; /// NM_164542;
Pathway : sleep // inferred from mutant phenotype /// 0045187 // regulation of circadian sleep/wake cycle
Interpro : sleep // traceable author statement /// 0045475 // locomotor rhythm // inferred from genetic interaction /// 0045475 //
FlyMine data for FBgn0014396.
BDGP gene expression has embryonic in situ data for tim: 38 pix of staining in 5 body parts.
BioGrid reports that CG3234 interacts with CG4778 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG2647 CG3234 .
TRiP has 2 RNAi stocks for FBgn0014396 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014396 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 2	4 of 4	1.40	None
Head	81 ± 17	4 of 4	5.70	Up
Eye	45 ± 14	4 of 4	3.17	None
Thoracicoabdominal ganglion	13 ± 3	2 of 4	0.90	None
Salivary gland	108 ± 17	4 of 4	7.58	Up
Crop	33 ± 5	4 of 4	2.30	None
Midgut	47 ± 5	4 of 4	3.30	Up
Tubule	90 ± 34	2 of 4	6.30	Up
Hindgut	29 ± 5	3 of 4	2.10	None
Heart	17 ± 2	4 of 4	1.19	None
Fat body	12 ± 6	1 of 4	0.89	None
Ovary	4 ± 1	0 of 4	0.30	None
Testis	3 ± 1	0 of 4	0.30	None
Male accessory glands	89 ± 4	4 of 4	6.30	Up
Virgin spermatheca	15 ± 5	2 of 4	1.06	None
Mated spermatheca	12 ± 5	2 of 4	0.84	None
Adult carcass	21 ± 5	2 of 4	1.50	None
Larval CNS	1 ± 1	0 of 4	0.10	None
Larval Salivary gland	5 ± 3	0 of 4	0.40	None
Larval midgut	14 ± 4	0 of 4	1.01	None
Larval tubule	0 ± 0	0 of 4	0.00	None
Larval hindgut	0 ± 0	0 of 4	0.04	None
Larval fat body	1 ± 0	0 of 4	0.10	None
Larval trachea	1 ± 1	0 of 4	0.10	None
Larval carcass	1 ± 0	0 of 4	0.08	None
S2 cells (growing)	0 ± 0	0 of 4	0.06	None
Whole fly	14 ± 6	2 of 4

Looking for CG3234-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720