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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32350-RA through 18771 annotations produced 1 hits



/// (CG32350 /// DperCG32350):

Annotation Number : CG32350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052350
Gbrowse : chr3L:23140752-23143589 (-) // 100.0 //
Probeset : 1638248_at
Accessions : protein= NP_730776;, nucleotide= NM_168987;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0052350.
BDGP gene expression has embryonic in situ data for CG32350: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0052350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 ± 134 of 4 1.10None
Head116 ± 64 of 4 0.50Down
Eye122 ± 64 of 4 0.54Down
Thoracicoabdominal ganglion165 ± 34 of 4 0.70Down
Salivary gland143 ± 124 of 4 0.62Down
Crop141 ± 54 of 4 0.60Down
Midgut167 ± 24 of 4 0.70Down
Tubule106 ± 34 of 4 0.50Down
Hindgut107 ± 54 of 4 0.50Down
Heart98 ± 44 of 4 0.43Down
Fat body148 ± 124 of 4 0.65Down
Ovary684 ± 194 of 4 3.00Up
Testis27 ± 14 of 4 0.10Down
Male accessory glands199 ± 74 of 4 0.90None
Virgin spermatheca157 ± 64 of 4 0.69Down
Mated spermatheca181 ± 114 of 4 0.79Down
Adult carcass63 ± 94 of 4 0.30Down
Larval CNS315 ± 204 of 4 1.38Up
Larval Salivary gland213 ± 104 of 4 0.93None
Larval midgut196 ± 94 of 4 0.86None
Larval tubule166 ± 104 of 4 0.70Down
Larval hindgut179 ± 64 of 4 0.78Down
Larval fat body209 ± 164 of 4 0.90None
Larval trachea253 ± 164 of 4 1.11None
Larval carcass132 ± 44 of 4 0.58Down
S2 cells (growing)155 ± 34 of 4 0.68Down
Whole fly229 ± 134 of 4

Looking for CG32350-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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