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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32354-RA through 18771 annotations produced 1 hits



(CG32354):

Annotation Number : CG32354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052354
Gbrowse : chr3L:8408952-8414380 (-) // 100.0 //
Probeset : 1636247_at
Accessions : protein= NP_729380;, nucleotide= NM_168275;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
Interpro : 0004866 // endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0005515 // protein bi
FlyMine data for FBgn0052354.
BDGP gene expression has embryonic in situ data for CG32354: 33 pix of staining in 16 body parts.
BioGrid reports that CG32354 interacts with CG9911 CG33017 CG7937 CG9941 .
VDRC has 2 RNAi stocks for FBgn0052354 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 24 of 4 4.80Up
Head53 ± 34 of 4 2.80Up
Eye45 ± 34 of 4 2.35Up
Thoracicoabdominal ganglion236 ± 34 of 412.30Up
Salivary gland13 ± 41 of 4 0.68None
Crop12 ± 00 of 4 0.60None
Midgut12 ± 40 of 4 0.70None
Tubule5 ± 00 of 4 0.30Down
Hindgut10 ± 00 of 4 0.50None
Heart10 ± 13 of 4 0.53None
Fat body6 ± 40 of 4 0.35None
Ovary7 ± 00 of 4 0.40None
Testis15 ± 23 of 4 0.80None
Male accessory glands28 ± 11 of 4 1.50None
Virgin spermatheca14 ± 00 of 4 0.73None
Mated spermatheca17 ± 10 of 4 0.91None
Adult carcass34 ± 43 of 4 1.80None
Larval CNS236 ± 214 of 412.37Up
Larval Salivary gland8 ± 20 of 4 0.45None
Larval midgut17 ± 40 of 4 0.92None
Larval tubule10 ± 30 of 4 0.60None
Larval hindgut11 ± 10 of 4 0.60None
Larval fat body41 ± 44 of 4 2.20Up
Larval trachea5 ± 10 of 4 0.31None
Larval carcass18 ± 10 of 4 0.95None
S2 cells (growing)12 ± 20 of 4 0.65None
Whole fly19 ± 42 of 4

Looking for CG32354-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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