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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32356-RA through 18771 annotations produced 3 hits



Y1-like (ImpE1):

Annotation Number : CG32356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001253
Gbrowse : chr3L:8365508-8384271 (+) // 99.83 //
Probeset : 1625625_at
Accessions : protein= NP_524849; /// NP_729371;, nucleotide= NM_080110; /// NM_168270;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // traceable author stat
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0008092 // cytoskeletal protein bindin
FlyMine data for FBgn0001253.
BDGP gene expression has embryonic in situ data for ImpE1: 13 pix of staining in 10 body parts.
Homophila reports that CG32356 is a close match (6e-11) to human gene LRP8;APOER2;MCI1 (NP_001018064), a gene associated with {Myocardial infarction, susceptibility to}, 608446 (3).
BioGrid reports that CG32356 interacts with CG6601 .
VDRC has 3 RNAi stocks for FBgn0001253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 04 of 4 4.90Up
Head31 24 of 4 2.40Up
Eye9 12 of 4 0.70None
Thoracicoabdominal ganglion90 74 of 4 6.90Up
Salivary gland21 41 of 4 1.65None
Crop13 14 of 4 1.00None
Midgut2 10 of 4 0.20Down
Tubule5 00 of 4 0.40Down
Hindgut14 22 of 4 1.10None
Heart5 21 of 4 0.42None
Fat body21 63 of 4 1.64None
Ovary0 00 of 4 0.10Down
Testis2 00 of 4 0.20Down
Male accessory glands5 10 of 4 0.40None
Virgin spermatheca14 14 of 4 1.14None
Mated spermatheca18 43 of 4 1.38None
Adult carcass7 41 of 4 0.50None
Larval CNS104 294 of 4 8.02Up
Larval Salivary gland9 21 of 4 0.69None
Larval midgut4 00 of 4 0.31None
Larval tubule5 20 of 4 0.40None
Larval hindgut10 24 of 4 0.84None
Larval fat body4 10 of 4 0.40None
Larval trachea10 53 of 4 0.78None
Larval carcass45 84 of 4 3.46Up
S2 cells (growing)2 00 of 4 0.18Down
Whole fly13 33 of 4



Y1-like (ImpE1):

Annotation Number : HDC09080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001253
Gbrowse : chr3L:8363024-8365524 (+) // 100.0 //
Probeset : 1634617_at
Accessions : protein= NP_524849; /// NP_729371;, nucleotide= NM_080110; /// NM_168270;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // traceable author stat
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0008092 // cytoskeletal protein bindin
FlyMine data for FBgn0001253.
BDGP gene expression has embryonic in situ data for ImpE1: 13 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0001253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.00None
Head3 10 of 4 1.60None
Eye0 00 of 4 0.43None
Thoracicoabdominal ganglion2 00 of 4 1.00None
Salivary gland7 30 of 4 3.61None
Crop4 10 of 4 2.10None
Midgut3 10 of 4 1.50None
Tubule2 00 of 4 1.40None
Hindgut2 00 of 4 1.30None
Heart0 00 of 4 0.38None
Fat body1 20 of 4 0.82None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 0.50None
Male accessory glands7 20 of 4 3.70None
Virgin spermatheca2 10 of 4 0.98None
Mated spermatheca3 10 of 4 1.70None
Adult carcass4 10 of 4 2.00None
Larval CNS1 10 of 4 0.71None
Larval Salivary gland1 10 of 4 0.83None
Larval midgut2 10 of 4 1.32None
Larval tubule1 00 of 4 0.80None
Larval hindgut0 00 of 4 0.43None
Larval fat body2 20 of 4 1.40None
Larval trachea2 00 of 4 1.07None
Larval carcass2 10 of 4 1.08None
S2 cells (growing)3 00 of 4 1.49None
Whole fly2 00 of 4



Y1-like (ImpE1):

Annotation Number : CG32356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001253
Gbrowse : chr3L:8365508-8373250 (+) // 100.0 //
Probeset : 1631375_a_at
Accessions : protein= NP_524849; /// NP_729371;, nucleotide= NM_080110; /// NM_168270;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0019898 // extrinsic to membrane // traceable author stat
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity /// 0008092 // cytoskeletal protein bindin
FlyMine data for FBgn0001253.
BDGP gene expression has embryonic in situ data for ImpE1: 13 pix of staining in 10 body parts.
Homophila reports that CG32356 is a close match (6e-11) to human gene LRP8;APOER2;MCI1 (NP_001018064), a gene associated with {Myocardial infarction, susceptibility to}, 608446 (3).
BioGrid reports that CG32356 interacts with CG6601 .
VDRC has 3 RNAi stocks for FBgn0001253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 2.60None
Head0 00 of 4 0.50None
Eye1 10 of 4 1.27None
Thoracicoabdominal ganglion1 00 of 4 0.90None
Salivary gland2 00 of 4 1.44None
Crop1 00 of 4 0.80None
Midgut1 10 of 4 1.30None
Tubule1 00 of 4 0.80None
Hindgut1 00 of 4 1.10None
Heart1 00 of 4 1.16None
Fat body1 00 of 4 0.80None
Ovary0 00 of 4 0.30None
Testis0 00 of 4 0.30None
Male accessory glands0 00 of 4 0.70None
Virgin spermatheca2 00 of 4 1.64None
Mated spermatheca1 00 of 4 0.69None
Adult carcass1 10 of 4 1.40None
Larval CNS8 22 of 4 6.02Up
Larval Salivary gland0 00 of 4 0.33None
Larval midgut1 00 of 4 0.82None
Larval tubule1 00 of 4 0.70None
Larval hindgut0 00 of 4 0.47None
Larval fat body1 00 of 4 1.10None
Larval trachea1 10 of 4 1.16None
Larval carcass0 00 of 4 0.36None
S2 cells (growing)0 00 of 4 0.40None
Whole fly1 00 of 4

Looking for CG32356-RA. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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