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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32364-RA through 18771 annotations produced 1 hits



(CG32364):

Annotation Number : CG32364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052364
Gbrowse : chr3L:8202957-8203771 (-) // 100.0 //
Probeset : 1632870_at
Accessions : protein= NP_729346;, nucleotide= NM_168261;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0052364.
TRiP has 1 RNAi stocks for FBgn0052364 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052364 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 14 of 4 0.80None
Head8 12 of 4 0.50None
Eye6 00 of 4 0.34None
Thoracicoabdominal ganglion8 11 of 4 0.50None
Salivary gland13 30 of 4 0.68None
Crop19 04 of 4 1.00None
Midgut4 00 of 4 0.20None
Tubule6 00 of 4 0.30Down
Hindgut5 10 of 4 0.30None
Heart5 10 of 4 0.26None
Fat body4 20 of 4 0.24None
Ovary34 24 of 4 1.80None
Testis63 24 of 4 3.30Up
Male accessory glands4 20 of 4 0.20None
Virgin spermatheca9 12 of 4 0.49None
Mated spermatheca10 13 of 4 0.56None
Adult carcass6 10 of 4 0.30None
Larval CNS3 11 of 4 0.19None
Larval Salivary gland3 00 of 4 0.16None
Larval midgut1 00 of 4 0.07None
Larval tubule5 00 of 4 0.30None
Larval hindgut5 21 of 4 0.30None
Larval fat body12 42 of 4 0.60None
Larval trachea4 30 of 4 0.24None
Larval carcass6 21 of 4 0.35None
S2 cells (growing)11 04 of 4 0.58None
Whole fly19 64 of 4

Looking for CG32364-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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