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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32379-RA through 18771 annotations produced 1 hits



(CG32379):

Annotation Number : CG32379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052379
Gbrowse : chr3L:7389454-7391309 (+) // 100.0 //
Probeset : 1628355_at
Accessions : protein= NP_729252;, nucleotide= NM_168213;
Interpro : 0004180 // carboxypeptidase activity // inferred from sequence or structural similarity /// 0004180 // carboxypeptidase
FlyMine data for FBgn0052379.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10None
Head0 ± 00 of 4 0.10None
Eye0 ± 00 of 4 0.06None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10None
Salivary gland6 ± 40 of 4 0.61None
Crop2 ± 10 of 4 0.30None
Midgut44 ± 54 of 4 4.40Up
Tubule1 ± 00 of 4 0.20Down
Hindgut9 ± 20 of 4 0.90None
Heart1 ± 10 of 4 0.19None
Fat body1 ± 10 of 4 0.13None
Ovary0 ± 00 of 4 0.10None
Testis1 ± 00 of 4 0.10None
Male accessory glands2 ± 00 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.12None
Mated spermatheca0 ± 00 of 4 0.07None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS0 ± 00 of 4 0.06None
Larval Salivary gland2 ± 10 of 4 0.21None
Larval midgut38 ± 172 of 4 3.85None
Larval tubule3 ± 10 of 4 0.30None
Larval hindgut1 ± 00 of 4 0.09None
Larval fat body1 ± 00 of 4 0.20None
Larval trachea1 ± 10 of 4 0.17None
Larval carcass1 ± 00 of 4 0.10None
S2 cells (growing)2 ± 00 of 4 0.27None
Whole fly10 ± 40 of 4

Looking for CG32379-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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