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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32403-RA through 18771 annotations produced 1 hits



Odorant receptor 65c (Or65c):

Annotation Number : CG32403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041623
Gbrowse : chr3L:6320782-6322169 (+) // 100.0 //
Probeset : 1632181_at
Accessions : protein= NP_729163;, nucleotide= NM_168165;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041623.
TRiP has 1 RNAi stocks for FBgn0041623 available for purchase.
VDRC has 2 RNAi stocks for FBgn0041623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head11 ± 11 of 4 1.80None
Eye5 ± 11 of 4 0.86None
Thoracicoabdominal ganglion1 ± 00 of 4 0.20None
Salivary gland15 ± 40 of 4 2.28None
Crop8 ± 10 of 4 1.20None
Midgut16 ± 01 of 4 2.60Up
Tubule8 ± 10 of 4 1.30None
Hindgut6 ± 20 of 4 1.00None
Heart4 ± 10 of 4 0.63None
Fat body7 ± 30 of 4 1.06None
Ovary4 ± 01 of 4 0.70None
Testis4 ± 20 of 4 0.70None
Male accessory glands21 ± 23 of 4 3.30Up
Virgin spermatheca10 ± 20 of 4 1.51None
Mated spermatheca9 ± 20 of 4 1.38None
Adult carcass9 ± 30 of 4 1.50None
Larval CNS5 ± 20 of 4 0.77None
Larval Salivary gland8 ± 20 of 4 1.25None
Larval midgut12 ± 30 of 4 1.84None
Larval tubule8 ± 10 of 4 1.20None
Larval hindgut4 ± 10 of 4 0.63None
Larval fat body7 ± 50 of 4 1.10None
Larval trachea3 ± 41 of 4 0.51None
Larval carcass10 ± 40 of 4 1.58None
S2 cells (growing)7 ± 10 of 4 1.09None
Whole fly6 ± 20 of 4

Looking for CG32403-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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