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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32418-RA through 18771 annotations produced 1 hits



/// Myt1 (CG32418 /// Myt1):

Annotation Number : CG32418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052418
Gbrowse : chr3L:5769416-5770389 (-) // 100.0 //
Probeset : 1629841_at
Accessions : protein= NP_729096;, nucleotide= NM_168136;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005794 // Golgi apparatus // inferred from direct assay ///
Interpro : 0004672 // protein kinase activity // inferred from sequence similarity /// 0004672 // protein kinase activity // non-tr
FlyMine data for FBgn0052418.
BDGP gene expression has embryonic in situ data for CG32418: 4 pix of staining in 1 body parts.
BioGrid reports that CG32418 interacts with CG9891 .
VDRC has 3 RNAi stocks for FBgn0052418 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 44 of 4 0.60Down
Head64 23 of 4 0.70Down
Eye56 04 of 4 0.59Down
Thoracicoabdominal ganglion49 43 of 4 0.50Down
Salivary gland52 60 of 4 0.54Down
Crop50 52 of 4 0.50Down
Midgut39 40 of 4 0.40Down
Tubule51 63 of 4 0.50Down
Hindgut31 20 of 4 0.30Down
Heart53 34 of 4 0.56Down
Fat body84 74 of 4 0.88None
Ovary192 34 of 4 2.00Up
Testis16 01 of 4 0.20Down
Male accessory glands127 64 of 4 1.30Up
Virgin spermatheca75 24 of 4 0.79Down
Mated spermatheca117 54 of 4 1.22Up
Adult carcass46 50 of 4 0.50Down
Larval CNS118 34 of 4 1.24Up
Larval Salivary gland63 10 of 4 0.66Down
Larval midgut32 30 of 4 0.34Down
Larval tubule24 21 of 4 0.30Down
Larval hindgut44 32 of 4 0.46Down
Larval fat body27 30 of 4 0.30Down
Larval trachea91 84 of 4 0.95None
Larval carcass55 122 of 4 0.58Down
S2 cells (growing)62 20 of 4 0.65Down
Whole fly95 34 of 4

Looking for CG32418-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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