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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32434-RB through 18771 annotations produced 1 hits



schizo (siz):

Annotation Number : CG32434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026179
Gbrowse : chr3L:21027638-21068542 (+) // 100.0 //
Probeset : 1626591_at
Accessions : protein= NP_001036618; /// NP_001163487; /// NP_730594; /// NP_996129;, nucleotide= NM_001043153; /// NM_001170016; /// NM_168881; /// NM_206407;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 //
FlyMine data for FBgn0026179.
Homophila reports that CG32434 is a close match (4e-31) to human gene ARFGEF2;BIG2 (NP_006411), a gene associated with Periventricular heterotopia with microcephaly, 608097 (3).
BioGrid reports that CG32434 interacts with CG8581 .
TRiP has 1 RNAi stocks for FBgn0026179 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain483 ± 44 of 4 2.50Up
Head313 ± 314 of 4 1.60Up
Eye332 ± 214 of 4 1.69Up
Thoracicoabdominal ganglion428 ± 354 of 4 2.20Up
Salivary gland832 ± 174 of 4 4.23Up
Crop393 ± 144 of 4 2.00Up
Midgut386 ± 94 of 4 2.00Up
Tubule464 ± 364 of 4 2.40Up
Hindgut429 ± 144 of 4 2.20Up
Heart459 ± 264 of 4 2.34Up
Fat body182 ± 294 of 4 0.93None
Ovary233 ± 64 of 4 1.20None
Testis66 ± 24 of 4 0.30Down
Male accessory glands168 ± 94 of 4 0.90None
Virgin spermatheca177 ± 144 of 4 0.90None
Mated spermatheca204 ± 84 of 4 1.04None
Adult carcass196 ± 194 of 4 1.00None
Larval CNS529 ± 404 of 4 2.69Up
Larval Salivary gland493 ± 324 of 4 2.51Up
Larval midgut896 ± 454 of 4 4.55Up
Larval tubule564 ± 134 of 4 2.90Up
Larval hindgut613 ± 234 of 4 3.11Up
Larval fat body370 ± 384 of 4 1.90Up
Larval trachea229 ± 234 of 4 1.17None
Larval carcass385 ± 564 of 4 1.96Up
S2 cells (growing)150 ± 64 of 4 0.77None
Whole fly196 ± 164 of 4

Looking for CG32434-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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