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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3244-RA through 18771 annotations produced 1 hits



(CG3244):

Annotation Number : CG3244
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031629
Gbrowse : chr2L:4796583-4801923 (-) // 100.0 //
Probeset : 1638365_at
Accessions : protein= NP_608858;, nucleotide= NM_135014;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005529 // sugar binding // inferred from electronic annot
FlyMine data for FBgn0031629.
BDGP gene expression has embryonic in situ data for CG3244: 15 pix of staining in 4 body parts.
BioGrid reports that CG3244 interacts with CG3929 CG5099 CG6172 CG6945 .
VDRC has 2 RNAi stocks for FBgn0031629 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 02 of 4 0.10Down
Head741 604 of 4 4.10Up
Eye288 34 of 4 1.59Up
Thoracicoabdominal ganglion20 34 of 4 0.10Down
Salivary gland204 164 of 4 1.13None
Crop1459 774 of 4 8.10Up
Midgut82 54 of 4 0.50Down
Tubule9 00 of 4 0.10Down
Hindgut790 374 of 4 4.40Up
Heart33 64 of 4 0.19Down
Fat body47 103 of 4 0.26Down
Ovary5 00 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands13 30 of 4 0.10Down
Virgin spermatheca167 144 of 4 0.92None
Mated spermatheca275 234 of 4 1.52Up
Adult carcass746 604 of 4 4.10Up
Larval CNS32 174 of 4 0.18Down
Larval Salivary gland158 64 of 4 0.87None
Larval midgut116 104 of 4 0.64Down
Larval tubule11 42 of 4 0.10Down
Larval hindgut1192 734 of 4 6.58Up
Larval fat body14 30 of 4 0.10Down
Larval trachea2670 2824 of 414.74Up
Larval carcass4173 3254 of 423.03Up
S2 cells (growing)2 10 of 4 0.01Down
Whole fly181 114 of 4

Looking for CG3244-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime