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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32441-RB through 18771 annotations produced 1 hits



(CG32441):

Annotation Number : CG32441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052441
Gbrowse : chr3L:21567230-21568734 (+) // 100.0 //
Probeset : 1625000_a_at
Accessions : protein= NP_730661; /// NP_730662;, nucleotide= NM_168925; /// NM_168926;
FlyMine data for FBgn0052441.
VDRC has 3 RNAi stocks for FBgn0052441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain592 124 of 4 1.90Up
Head625 134 of 4 2.00Up
Eye1551 344 of 4 4.89Up
Thoracicoabdominal ganglion647 114 of 4 2.00Up
Salivary gland1218 214 of 4 3.84Up
Crop551 194 of 4 1.70Up
Midgut520 74 of 4 1.60Up
Tubule694 134 of 4 2.20Up
Hindgut543 94 of 4 1.70Up
Heart526 304 of 4 1.66Up
Fat body397 484 of 4 1.25Up
Ovary374 64 of 4 1.20Up
Testis287 74 of 4 0.90Down
Male accessory glands432 74 of 4 1.40Up
Virgin spermatheca321 204 of 4 1.01None
Mated spermatheca301 114 of 4 0.95None
Adult carcass427 104 of 4 1.30Up
Larval CNS334 84 of 4 1.06None
Larval Salivary gland597 474 of 4 1.88Up
Larval midgut325 124 of 4 1.03None
Larval tubule571 84 of 4 1.80Up
Larval hindgut322 44 of 4 1.02None
Larval fat body479 364 of 4 1.50Up
Larval trachea514 414 of 4 1.62Up
Larval carcass260 54 of 4 0.82Down
S2 cells (growing)611 144 of 4 1.93Up
Whole fly317 74 of 4

Looking for CG32441-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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