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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32445-RA through 18771 annotations produced 1 hits


aldose 1-epimerase /// (CG32444 /// CG32445):

Annotation Number : CG32445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052445
Gbrowse : chr3L:21632481-21633810 (+) // 100.0 //
Probeset : 1630209_at
Accessions : protein= NP_730671;, nucleotide= NM_168931;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004034 // aldose 1-epimerase activity // infer
FlyMine data for FBgn0052445.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body0 ± 00 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis1589 ± 614 of 410.50Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body157 ± 933 of 4 1.00None
Larval trachea5 ± 60 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly151 ± 34 of 4

Looking for CG32445-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime