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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32446-RA through 18771 annotations produced 1 hits



CG32446 (Atox1):

Annotation Number : CG32446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052446
Gbrowse : chr3L:21634141-21635699 (+) // 100.0 //
Probeset : 1626304_at
Accessions : protein= NP_730672;, nucleotide= NM_168932;
Interpro : 0046872 // metal ion binding // inferred from electronic annotation
FlyMine data for FBgn0052446.
VDRC has 3 RNAi stocks for FBgn0052446 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain809 ± 194 of 4 1.70Up
Head676 ± 234 of 4 1.40Up
Eye791 ± 284 of 4 1.65Up
Thoracicoabdominal ganglion1150 ± 214 of 4 2.40Up
Salivary gland2750 ± 564 of 4 5.72Up
Crop802 ± 104 of 4 1.70Up
Midgut753 ± 134 of 4 1.60Up
Tubule1656 ± 384 of 4 3.40Up
Hindgut540 ± 54 of 4 1.10None
Heart1004 ± 464 of 4 2.09Up
Fat body605 ± 484 of 4 1.26Up
Ovary609 ± 124 of 4 1.30Up
Testis245 ± 104 of 4 0.50Down
Male accessory glands1243 ± 434 of 4 2.60Up
Virgin spermatheca1496 ± 134 of 4 3.11Up
Mated spermatheca1403 ± 434 of 4 2.92Up
Adult carcass537 ± 124 of 4 1.10None
Larval CNS446 ± 64 of 4 0.93None
Larval Salivary gland2963 ± 594 of 4 6.16Up
Larval midgut1071 ± 184 of 4 2.23Up
Larval tubule1817 ± 594 of 4 3.80Up
Larval hindgut493 ± 144 of 4 1.03None
Larval fat body933 ± 864 of 4 1.90Up
Larval trachea549 ± 574 of 4 1.14None
Larval carcass536 ± 354 of 4 1.12None
S2 cells (growing)414 ± 144 of 4 0.86None
Whole fly481 ± 224 of 4

Looking for CG32446-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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