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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32452-RA through 18771 annotations produced 1 hits



(CG32452):

Annotation Number : CG32452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052452
Gbrowse : chr3L:22710838-22712846 (+) // 100.0 //
Probeset : 1629045_s_at
Accessions : protein= NP_730736; /// NP_730737;, nucleotide= NM_168956; /// NM_168957;
FlyMine data for FBgn0052452.
BDGP gene expression has embryonic in situ data for CG32452: 4 pix of staining in 1 body parts.
BioGrid reports that CG32452 interacts with CG9654 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 14 of 4 0.60None
Head20 24 of 4 0.50None
Eye16 14 of 4 0.41Down
Thoracicoabdominal ganglion22 04 of 4 0.50None
Salivary gland31 34 of 4 0.78None
Crop20 04 of 4 0.50None
Midgut18 14 of 4 0.50None
Tubule15 03 of 4 0.40Down
Hindgut14 12 of 4 0.40Down
Heart15 03 of 4 0.38Down
Fat body14 12 of 4 0.35Down
Ovary122 34 of 4 3.00Up
Testis10 13 of 4 0.30Down
Male accessory glands22 43 of 4 0.50None
Virgin spermatheca12 12 of 4 0.31Down
Mated spermatheca15 04 of 4 0.38Down
Adult carcass30 34 of 4 0.80None
Larval CNS54 24 of 4 1.34None
Larval Salivary gland42 24 of 4 1.04None
Larval midgut16 22 of 4 0.40Down
Larval tubule14 14 of 4 0.40Down
Larval hindgut19 24 of 4 0.48None
Larval fat body12 10 of 4 0.30Down
Larval trachea22 64 of 4 0.55None
Larval carcass21 24 of 4 0.54None
S2 cells (growing)90 24 of 4 2.25Up
Whole fly40 74 of 4

Looking for CG32452-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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