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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3246-RA through 18771 annotations produced 1 hits


Annotation Number : CG3246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031538
Gbrowse : chr2L:3460314-3461975 (-) // 100.0 //
Probeset : 1637422_at
Accessions : protein= NP_608781;, nucleotide= NM_134937;
FlyMine data for FBgn0031538.
BDGP gene expression has embryonic in situ data for CG3246: 14 pix of staining in 4 body parts.
VDRC has 1 RNAi stocks for FBgn0031538 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 14 of 4 0.20Down
Head1193 504 of 4 4.60Up
Eye557 974 of 4 2.15None
Thoracicoabdominal ganglion36 34 of 4 0.10Down
Salivary gland18 20 of 4 0.07Down
Crop25 54 of 4 0.10Down
Midgut8 21 of 4 0.00Down
Tubule33 83 of 4 0.10Down
Hindgut130 94 of 4 0.50Down
Heart1567 1234 of 4 6.04Up
Fat body2418 3544 of 4 9.32Up
Ovary1 00 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands14 22 of 4 0.10Down
Virgin spermatheca2295 1104 of 4 8.85Up
Mated spermatheca2354 1014 of 4 9.07Up
Adult carcass1460 654 of 4 5.60Up
Larval CNS91 74 of 4 0.35Down
Larval Salivary gland38 54 of 4 0.15Down
Larval midgut11 40 of 4 0.04Down
Larval tubule10 10 of 4 0.00Down
Larval hindgut40 64 of 4 0.15Down
Larval fat body1477 904 of 4 5.70Up
Larval trachea35 204 of 4 0.14Down
Larval carcass24 33 of 4 0.09Down
S2 cells (growing)114 44 of 4 0.44Down
Whole fly259 204 of 4

Looking for CG3246-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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