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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32473-RA through 18771 annotations produced 1 hits



(CG32473):

Annotation Number : CG32473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052473
Gbrowse : chr3R:9128374-9138519 (+) // 100.0 //
Probeset : 1629464_a_at
Accessions : protein= NP_650276; /// NP_731786; /// NP_731787;, nucleotide= NM_142019; /// NM_169503; /// NM_169504;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein binding //
FlyMine data for FBgn0052473.
BDGP gene expression has embryonic in situ data for CG32473: 18 pix of staining in 14 body parts.
BioGrid reports that CG32473 interacts with CG7787 .
VDRC has 2 RNAi stocks for FBgn0052473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain217 ± 44 of 4 0.40Down
Head138 ± 54 of 4 0.30Down
Eye130 ± 64 of 4 0.24Down
Thoracicoabdominal ganglion231 ± 84 of 4 0.40Down
Salivary gland318 ± 234 of 4 0.58Down
Crop142 ± 24 of 4 0.30Down
Midgut1988 ± 864 of 4 3.60Up
Tubule294 ± 664 of 4 0.50Down
Hindgut2300 ± 694 of 4 4.20Up
Heart357 ± 54 of 4 0.65Down
Fat body205 ± 94 of 4 0.37Down
Ovary471 ± 54 of 4 0.90None
Testis278 ± 54 of 4 0.50Down
Male accessory glands123 ± 94 of 4 0.20Down
Virgin spermatheca150 ± 64 of 4 0.27Down
Mated spermatheca162 ± 64 of 4 0.29Down
Adult carcass192 ± 134 of 4 0.30Down
Larval CNS174 ± 84 of 4 0.32Down
Larval Salivary gland152 ± 54 of 4 0.28Down
Larval midgut2454 ± 724 of 4 4.46Up
Larval tubule288 ± 124 of 4 0.50Down
Larval hindgut1154 ± 1734 of 4 2.10Up
Larval fat body254 ± 144 of 4 0.50Down
Larval trachea451 ± 364 of 4 0.82None
Larval carcass339 ± 124 of 4 0.62Down
S2 cells (growing)159 ± 34 of 4 0.29Down
Whole fly550 ± 514 of 4

Looking for CG32473-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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