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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32474-RA through 18771 annotations produced 1 hits



Dysfusion (dys):

Annotation Number : CG32474
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039411
Gbrowse : chr3R:21903143-21922267 (-) // 100.0 //
Probeset : 1630618_at
Accessions : protein= NP_001097935; /// NP_001097936; /// NP_733137;, nucleotide= NM_001104465; /// NM_001104466; /// NM_170258;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
Interpro : open tracheal system // inferred from mutant phenotype /// 0010551 // regulation of gene-specific transcription from RN
FlyMine data for FBgn0039411.
TRiP has 2 RNAi stocks for FBgn0039411 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 20 of 4 0.60None
Head3 ± 10 of 4 0.50None
Eye1 ± 00 of 4 0.25Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland15 ± 50 of 4 2.11None
Crop7 ± 10 of 4 1.00None
Midgut6 ± 00 of 4 0.90None
Tubule4 ± 00 of 4 0.60Down
Hindgut17 ± 24 of 4 2.40Up
Heart4 ± 11 of 4 0.64None
Fat body4 ± 30 of 4 0.62None
Ovary4 ± 00 of 4 0.60Down
Testis4 ± 10 of 4 0.70None
Male accessory glands7 ± 20 of 4 1.00None
Virgin spermatheca7 ± 11 of 4 0.99None
Mated spermatheca6 ± 00 of 4 0.95None
Adult carcass21 ± 31 of 4 2.90Up
Larval CNS3 ± 20 of 4 0.53Down
Larval Salivary gland4 ± 30 of 4 0.64None
Larval midgut8 ± 20 of 4 1.12None
Larval tubule5 ± 00 of 4 0.80None
Larval hindgut33 ± 24 of 4 4.53Up
Larval fat body5 ± 10 of 4 0.80None
Larval trachea2 ± 10 of 4 0.31Down
Larval carcass6 ± 10 of 4 0.92None
S2 cells (growing)6 ± 00 of 4 0.86None
Whole fly7 ± 01 of 4

Looking for CG32474-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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