FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32476-RA through 18771 annotations produced 1 hits

methuselah-like 14 (mthl14):

Annotation Number : CG32476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052476
Gbrowse : chr3L:247494-250314 (+) // 100.0 //
Probeset : 1625450_at
Accessions : protein= NP_728509;, nucleotide= NM_167821;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0052476.
VDRC has 2 RNAi stocks for FBgn0052476 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	2 of 4	0.10	Down
Head	5 ± 1	1 of 4	0.10	Down
Eye	2 ± 0	0 of 4	0.04	Down
Thoracicoabdominal ganglion	7 ± 1	1 of 4	0.10	Down
Salivary gland	9 ± 3	0 of 4	0.18	Down
Crop	43 ± 2	4 of 4	0.80	None
Midgut	420 ± 9	4 of 4	7.80	Up
Tubule	722 ± 21	4 of 4	13.50	Up
Hindgut	130 ± 3	4 of 4	2.40	Up
Heart	235 ± 17	4 of 4	4.38	Up
Fat body	141 ± 26	4 of 4	2.64	Up
Ovary	7 ± 1	3 of 4	0.10	Down
Testis	64 ± 3	4 of 4	1.20	None
Male accessory glands	13 ± 1	2 of 4	0.20	Down
Virgin spermatheca	2 ± 1	0 of 4	0.05	Down
Mated spermatheca	9 ± 2	3 of 4	0.17	Down
Adult carcass	93 ± 9	4 of 4	1.70	Up
Larval CNS	5 ± 0	4 of 4	0.09	Down
Larval Salivary gland	5 ± 1	1 of 4	0.10	Down
Larval midgut	370 ± 11	4 of 4	6.90	Up
Larval tubule	722 ± 3	4 of 4	13.50	Up
Larval hindgut	169 ± 7	4 of 4	3.17	Up
Larval fat body	30 ± 6	4 of 4	0.60	Down
Larval trachea	5 ± 3	2 of 4	0.11	Down
Larval carcass	126 ± 7	4 of 4	2.36	Up
S2 cells (growing)	32 ± 5	4 of 4	0.61	Down
Whole fly	53 ± 4	4 of 4

Looking for CG32476-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720