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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32485-RA through 18771 annotations produced 1 hits



(CG32485):

Annotation Number : CG32485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052485
Gbrowse : chr3L:3050328-3051765 (+) // 100.0 //
Probeset : 1639640_at
Accessions : protein= NP_728794;, nucleotide= NM_167972;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052485.
BDGP gene expression has embryonic in situ data for CG32485: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0052485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain366 ± 94 of 4 3.10Up
Head269 ± 94 of 4 2.30Up
Eye410 ± 344 of 4 3.44Up
Thoracicoabdominal ganglion283 ± 54 of 4 2.40Up
Salivary gland206 ± 144 of 4 1.73Up
Crop171 ± 114 of 4 1.40Up
Midgut473 ± 134 of 4 4.00Up
Tubule370 ± 224 of 4 3.10Up
Hindgut327 ± 34 of 4 2.70Up
Heart82 ± 74 of 4 0.70Down
Fat body50 ± 134 of 4 0.42Down
Ovary119 ± 54 of 4 1.00None
Testis151 ± 64 of 4 1.30Up
Male accessory glands133 ± 144 of 4 1.10None
Virgin spermatheca133 ± 74 of 4 1.12None
Mated spermatheca121 ± 94 of 4 1.02None
Adult carcass72 ± 94 of 4 0.60Down
Larval CNS62 ± 144 of 4 0.52Down
Larval Salivary gland34 ± 83 of 4 0.29Down
Larval midgut222 ± 344 of 4 1.87None
Larval tubule208 ± 224 of 4 1.70Up
Larval hindgut89 ± 124 of 4 0.75None
Larval fat body37 ± 113 of 4 0.30Down
Larval trachea39 ± 114 of 4 0.33Down
Larval carcass14 ± 30 of 4 0.12Down
S2 cells (growing)135 ± 14 of 4 1.14None
Whole fly119 ± 94 of 4

Looking for CG32485-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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