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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32490-RG through 18771 annotations produced 2 hits



complexin (cpx):

Annotation Number : CG32490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041605
Gbrowse : chr3R:106000-127263 (+) // 100.0 //
Probeset : 1636880_s_at
Accessions : protein= NP_001014602; /// NP_001014603; /// NP_001097673; /// NP_001097674; /// NP_001097675; /// NP_001097676; /// NP_001097677; /// NP_001097678; /// NP_001097679; /// NP_001163499; /// NP_001163500; /// NP_001163501; /// NP_001163502; /// NP_001163503; /// NP_001163504; /// NP_525019; /// NP_730800; /// NP_730801; /// NP_730802; /// NP_730803; /// NP_730804;, nucleotide= NM_001014602; /// NM_001014603; /// NM_001104203; /// NM_001104204; /// NM_001104205; /// NM_001104206; /// NM_001104207; /// NM_001104208; /// NM_001104209; /// NM_001170028; /// NM_001170029; /// NM_001170030; /// NM_001170031; /// NM_001170032; /// NM_001170033; /// NM_080280; /// NM_164327; /// NM_164328; /// NM_164329; /// NM_164330; /// NM_164331;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0019905 // synta
FlyMine data for FBgn0041605.
TRiP has 1 RNAi stocks for FBgn0041605 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2710 ± 1024 of 4 6.40Up
Head2140 ± 1894 of 4 5.10Up
Eye1304 ± 324 of 4 3.10Up
Thoracicoabdominal ganglion2499 ± 514 of 4 5.90Up
Salivary gland14 ± 12 of 4 0.03Down
Crop5 ± 12 of 4 0.00Down
Midgut6 ± 11 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut6 ± 13 of 4 0.00Down
Heart51 ± 24 of 4 0.12Down
Fat body116 ± 204 of 4 0.28Down
Ovary0 ± 00 of 4 0.00Down
Testis4 ± 01 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca90 ± 94 of 4 0.22Down
Mated spermatheca94 ± 104 of 4 0.23Down
Adult carcass85 ± 104 of 4 0.20Down
Larval CNS1438 ± 1734 of 4 3.42Up
Larval Salivary gland4 ± 10 of 4 0.01Down
Larval midgut3 ± 00 of 4 0.01Down
Larval tubule6 ± 03 of 4 0.00Down
Larval hindgut7 ± 12 of 4 0.02Down
Larval fat body11 ± 32 of 4 0.00Down
Larval trachea28 ± 452 of 4 0.07Down
Larval carcass15 ± 24 of 4 0.04Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly420 ± 484 of 4



complexin /// Lochrig (cpx /// SNF4Agamma):

Annotation Number : CG32490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041605
Gbrowse : chr3R:110073-128309 (+) // 100.0 //
Probeset : 1639609_s_at
Accessions : protein= NP_001014602; /// NP_001014603; /// NP_001097673; /// NP_001097674; /// NP_001097675; /// NP_001097676; /// NP_001097677; /// NP_001097678; /// NP_001097679; /// NP_001163499; /// NP_001163500; /// NP_001163501; /// NP_001163502; /// NP_001163503; /// NP_001163504; /// NP_525019; /// NP_730800; /// NP_730801; /// NP_730802; /// NP_730803; /// NP_730804;, nucleotide= NM_001014602; /// NM_001014603; /// NM_001104203; /// NM_001104204; /// NM_001104205; /// NM_001104206; /// NM_001104207; /// NM_001104208; /// NM_001104209; /// NM_001170028; /// NM_001170029; /// NM_001170030; /// NM_001170031; /// NM_001170032; /// NM_001170033; /// NM_080280; /// NM_164327; /// NM_164328; /// NM_164329; /// NM_164330; /// NM_164331;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase acti
FlyMine data for FBgn0041605.
TRiP has 1 RNAi stocks for FBgn0041605 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain493 ± 304 of 414.50Up
Head166 ± 304 of 4 4.90Up
Eye1864 ± 1204 of 454.84Up
Thoracicoabdominal ganglion259 ± 594 of 4 7.60Up
Salivary gland7 ± 30 of 4 0.21Down
Crop2 ± 00 of 4 0.10Down
Midgut4 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart47 ± 44 of 4 1.40None
Fat body83 ± 184 of 4 2.46Up
Ovary2 ± 10 of 4 0.10Down
Testis21 ± 04 of 4 0.60None
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca41 ± 34 of 4 1.22None
Mated spermatheca35 ± 44 of 4 1.04None
Adult carcass29 ± 23 of 4 0.90None
Larval CNS46 ± 54 of 4 1.38None
Larval Salivary gland4 ± 20 of 4 0.14Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut7 ± 00 of 4 0.21Down
Larval fat body38 ± 83 of 4 1.10None
Larval trachea26 ± 411 of 4 0.77None
Larval carcass2 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly34 ± 44 of 4

Looking for CG32490-RG. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime