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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32498-RO through 18771 annotations produced 1 hits



chrX:3070474-3233338 (+) // 100.0 // (dunce):

Annotation Number : CG32498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624686_a_at
Accessions : protein= , nucleotide= NP_525061; /// NP_726847; /// NP_726849; /// NP_726850; /// NP_726852; /// NP_726853; /// NP_726854; /// NP_726855; /// NP_726856; /// NP_726857; /// NP_726858; /// NP_726859;
Pathway : 0000003 // reproduction // non-traceable author statement /// 0001661 // conditioned taste aversion // inferred from mut
FlyMine data for full length.
Homophila reports that CG32498 is a close match (5e-24) to human gene PDE11A;PDE11A1;PDE11A2;PDE11A3;PPNAD2 (NP_058649), a gene associated with Pigmented nodular adrenocortical disease, primary, 2, 610475 (3).
BioGrid reports that CG32498 interacts with CG11937 CG3263 CG17998 CG2275 CG8318 CG9533 CG9533 CG40306 Dmel CG33956 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain294 44 of 4 4.10Up
Head96 54 of 4 1.30Up
Eye131 74 of 4 1.83Up
Thoracicoabdominal ganglion240 144 of 4 3.30Up
Salivary gland437 84 of 4 6.07Up
Crop64 44 of 4 0.90None
Midgut54 34 of 4 0.80Down
Tubule109 74 of 4 1.50Up
Hindgut47 14 of 4 0.70Down
Heart170 64 of 4 2.37Up
Fat body56 64 of 4 0.79Down
Ovary71 34 of 4 1.00None
Testis14 14 of 4 0.20Down
Male accessory glands60 14 of 4 0.80Down
Virgin spermatheca56 24 of 4 0.79Down
Mated spermatheca64 24 of 4 0.90None
Adult carcass117 104 of 4 1.60Up
Larval CNS134 114 of 4 1.87Up
Larval Salivary gland57 44 of 4 0.80Down
Larval midgut62 24 of 4 0.86None
Larval tubule49 24 of 4 0.70Down
Larval hindgut63 24 of 4 0.89None
Larval fat body34 34 of 4 0.50Down
Larval trachea125 284 of 4 1.75Up
Larval carcass250 194 of 4 3.49Up
S2 cells (growing)75 44 of 4 1.05None
Whole fly72 34 of 4

Looking for CG32498-RO. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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