FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32499-RA through 18771 annotations produced 1 hits

CG32499 (Cda4):

Annotation Number : CG32499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052499
Gbrowse : chrX:21985469-22034545 (-) // 99.79 //
Probeset : 1636046_at
Accessions : protein= NP_728468;, nucleotide= NM_167788;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0008061 // chitin binding // inferred from ele
FlyMine data for FBgn0052499.
BDGP gene expression has embryonic in situ data for CG32499: 17 pix of staining in 14 body parts.
VDRC has 8 RNAi stocks for FBgn0052499 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.30	None
Head	13 ± 2	1 of 4	1.50	None
Eye	5 ± 0	1 of 4	0.58	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.30	None
Salivary gland	11 ± 1	1 of 4	1.30	None
Crop	7 ± 2	0 of 4	0.90	None
Midgut	2 ± 1	0 of 4	0.30	None
Tubule	6 ± 0	0 of 4	0.70	Down
Hindgut	1 ± 0	0 of 4	0.20	None
Heart	4 ± 0	0 of 4	0.52	None
Fat body	7 ± 4	0 of 4	0.84	None
Ovary	1 ± 0	0 of 4	0.20	None
Testis	13 ± 0	4 of 4	1.60	None
Male accessory glands	19 ± 3	3 of 4	2.20	None
Virgin spermatheca	1 ± 0	0 of 4	0.14	None
Mated spermatheca	1 ± 0	0 of 4	0.17	None
Adult carcass	24 ± 4	2 of 4	2.80	Up
Larval CNS	23 ± 5	4 of 4	2.73	Up
Larval Salivary gland	24 ± 3	4 of 4	2.77	Up
Larval midgut	11 ± 2	1 of 4	1.32	None
Larval tubule	5 ± 2	1 of 4	0.70	None
Larval hindgut	224 ± 16	4 of 4	25.77	Up
Larval fat body	4 ± 3	1 of 4	0.50	None
Larval trachea	609 ± 29	4 of 4	69.81	Up
Larval carcass	1359 ± 133	4 of 4	155.76	Up
S2 cells (growing)	6 ± 0	0 of 4	0.70	None
Whole fly	8 ± 2	1 of 4

Looking for CG32499-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720