FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32505-RA through 18771 annotations produced 1 hits

Protein phosphatase X (Pp4-19C):

Annotation Number : CG32505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023177
Gbrowse : chrX:20292113-20295045 (-) // 100.0 //
Probeset : 1623506_s_at
Accessions : protein= NP_524803; /// NP_728342;, nucleotide= NM_080064; /// NM_167703;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0023177.
BDGP gene expression has embryonic in situ data for Pp4-19C: 9 pix of staining in 6 body parts.
TRiP has 2 RNAi stocks for FBgn0023177 available for purchase.
VDRC has 1 RNAi stocks for FBgn0023177 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	161 ± 4	4 of 4	0.60	Down
Head	120 ± 5	4 of 4	0.50	Down
Eye	139 ± 3	4 of 4	0.52	Down
Thoracicoabdominal ganglion	141 ± 3	4 of 4	0.50	Down
Salivary gland	162 ± 5	4 of 4	0.61	Down
Crop	211 ± 5	4 of 4	0.80	Down
Midgut	151 ± 8	4 of 4	0.60	Down
Tubule	202 ± 10	4 of 4	0.80	Down
Hindgut	132 ± 6	4 of 4	0.50	Down
Heart	92 ± 3	4 of 4	0.34	Down
Fat body	108 ± 15	4 of 4	0.41	Down
Ovary	534 ± 11	4 of 4	2.00	Up
Testis	41 ± 2	2 of 4	0.20	Down
Male accessory glands	127 ± 2	4 of 4	0.50	Down
Virgin spermatheca	113 ± 7	4 of 4	0.42	Down
Mated spermatheca	112 ± 4	4 of 4	0.42	Down
Adult carcass	94 ± 3	4 of 4	0.40	Down
Larval CNS	661 ± 24	4 of 4	2.48	Up
Larval Salivary gland	368 ± 11	4 of 4	1.38	Up
Larval midgut	220 ± 10	4 of 4	0.82	Down
Larval tubule	370 ± 6	4 of 4	1.40	Up
Larval hindgut	255 ± 15	4 of 4	0.96	None
Larval fat body	147 ± 7	4 of 4	0.50	Down
Larval trachea	322 ± 19	4 of 4	1.21	Up
Larval carcass	292 ± 5	4 of 4	1.09	Up
S2 cells (growing)	502 ± 10	4 of 4	1.88	Up
Whole fly	267 ± 5	4 of 4

Looking for CG32505-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720