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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3254-RA through 18771 annotations produced 2 hits



polypeptide GalNAc transferase 2 (pgant2):

Annotation Number : Stencil:2L:3400942:3400146:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031530
Gbrowse : chr2L:3407577-3408373 (-) // 100.0 //
Probeset : 1639881_at
Accessions : protein= NP_608773;, nucleotide= NM_134929;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004653 // polypept
FlyMine data for FBgn0031530.
BDGP gene expression has embryonic in situ data for CG3254: 19 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0031530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 2.40Up
Head10 12 of 4 1.90None
Eye7 11 of 4 1.40None
Thoracicoabdominal ganglion10 22 of 4 1.90None
Salivary gland20 20 of 4 3.93Up
Crop7 10 of 4 1.40None
Midgut11 32 of 4 2.10None
Tubule6 00 of 4 1.20None
Hindgut6 00 of 4 1.20None
Heart2 00 of 4 0.40None
Fat body7 40 of 4 1.34None
Ovary2 00 of 4 0.40None
Testis3 10 of 4 0.60None
Male accessory glands5 20 of 4 1.00None
Virgin spermatheca5 10 of 4 0.98None
Mated spermatheca3 10 of 4 0.63None
Adult carcass11 21 of 4 2.10None
Larval CNS8 12 of 4 1.58None
Larval Salivary gland5 10 of 4 1.10None
Larval midgut11 01 of 4 2.08Up
Larval tubule13 14 of 4 2.40Up
Larval hindgut1 00 of 4 0.22None
Larval fat body3 10 of 4 0.60None
Larval trachea3 20 of 4 0.72None
Larval carcass8 10 of 4 1.53None
S2 cells (growing)8 00 of 4 1.67None
Whole fly5 10 of 4



polypeptide GalNAc transferase 2 (pgant2):

Annotation Number : CG3254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031530
Gbrowse : chr2L:3404459-3407570 (-) // 100.0 //
Probeset : 1639535_at
Accessions : protein= NP_608773;, nucleotide= NM_134929;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0004653 // polypeptide N-acetylgalactosaminyltransferase activity // inferred from direct assay /// 0004653 // polypept
FlyMine data for FBgn0031530.
BDGP gene expression has embryonic in situ data for CG3254: 19 pix of staining in 4 body parts.
Homophila reports that CG3254 is a close match (3e-101) to human gene GALNT3;HFTC;HHS (NP_004473), a gene associated with Hyperostosis-hyperphosphatemia syndrome, 610233 (3);Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3).
VDRC has 2 RNAi stocks for FBgn0031530 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain336 144 of 410.50Up
Head190 204 of 4 6.00Up
Eye166 114 of 4 5.22Up
Thoracicoabdominal ganglion305 124 of 4 9.60Up
Salivary gland37 44 of 4 1.18None
Crop20 24 of 4 0.60Down
Midgut129 34 of 4 4.00Up
Tubule199 144 of 4 6.30Up
Hindgut33 24 of 4 1.10None
Heart15 04 of 4 0.48Down
Fat body19 44 of 4 0.61Down
Ovary7 14 of 4 0.20Down
Testis10 14 of 4 0.30Down
Male accessory glands33 64 of 4 1.00None
Virgin spermatheca23 24 of 4 0.74None
Mated spermatheca22 14 of 4 0.70None
Adult carcass15 32 of 4 0.50Down
Larval CNS228 304 of 4 7.16Up
Larval Salivary gland19 24 of 4 0.60Down
Larval midgut221 104 of 4 6.95Up
Larval tubule158 44 of 4 5.00Up
Larval hindgut54 34 of 4 1.70Up
Larval fat body5 10 of 4 0.20Down
Larval trachea63 64 of 4 2.00Up
Larval carcass392 744 of 412.30Up
S2 cells (growing)51 44 of 4 1.62Up
Whole fly31 34 of 4

Looking for CG3254-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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