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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32544-RA through 18771 annotations produced 1 hits



(CG32544):

Annotation Number : CG32544
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052544
Gbrowse : chrX:18754316-18755033 (+) // 100.0 //
Probeset : 1627922_at
Accessions : protein= NP_728208;, nucleotide= NM_167637;
FlyMine data for FBgn0052544.
VDRC has 1 RNAi stocks for FBgn0052544 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 ± 64 of 417.30Up
Head51 ± 94 of 4 4.60Up
Eye104 ± 104 of 4 9.38Up
Thoracicoabdominal ganglion121 ± 124 of 410.80Up
Salivary gland9 ± 30 of 4 0.82None
Crop3 ± 10 of 4 0.30Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.40Down
Hindgut4 ± 10 of 4 0.40Down
Heart14 ± 11 of 4 1.30None
Fat body2 ± 10 of 4 0.24Down
Ovary2 ± 00 of 4 0.20Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.30Down
Virgin spermatheca0 ± 00 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.09Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS44 ± 44 of 4 4.02Up
Larval Salivary gland1 ± 00 of 4 0.17Down
Larval midgut4 ± 10 of 4 0.43Down
Larval tubule4 ± 10 of 4 0.40Down
Larval hindgut2 ± 10 of 4 0.24Down
Larval fat body2 ± 00 of 4 0.20Down
Larval trachea2 ± 20 of 4 0.26Down
Larval carcass4 ± 00 of 4 0.42Down
S2 cells (growing)1 ± 00 of 4 0.14Down
Whole fly11 ± 12 of 4

Looking for CG32544-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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