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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32566-RC through 18771 annotations produced 1 hits



(CG9132):

Annotation Number : CG32566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030791
Gbrowse : chrX:16691548-16696233 (-) // 100.0 //
Probeset : 1631655_a_at
Accessions : protein= NP_996490; /// NP_996491;, nucleotide= NM_206767; /// NM_206768;
Pathway : 0005905 // coated pit // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electr
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0030791.
VDRC has 1 RNAi stocks for FBgn0030791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain645 ± 74 of 4 3.10Up
Head407 ± 154 of 4 2.00Up
Eye874 ± 224 of 4 4.24Up
Thoracicoabdominal ganglion761 ± 264 of 4 3.70Up
Salivary gland828 ± 324 of 4 4.02Up
Crop301 ± 44 of 4 1.50Up
Midgut334 ± 54 of 4 1.60Up
Tubule453 ± 174 of 4 2.20Up
Hindgut333 ± 44 of 4 1.60Up
Heart595 ± 124 of 4 2.89Up
Fat body239 ± 224 of 4 1.16None
Ovary223 ± 54 of 4 1.10None
Testis85 ± 44 of 4 0.40Down
Male accessory glands471 ± 114 of 4 2.30Up
Virgin spermatheca400 ± 134 of 4 1.94Up
Mated spermatheca456 ± 34 of 4 2.21Up
Adult carcass214 ± 114 of 4 1.00None
Larval CNS431 ± 224 of 4 2.09Up
Larval Salivary gland1111 ± 304 of 4 5.39Up
Larval midgut568 ± 54 of 4 2.75Up
Larval tubule741 ± 224 of 4 3.60Up
Larval hindgut473 ± 174 of 4 2.30Up
Larval fat body441 ± 344 of 4 2.10Up
Larval trachea621 ± 174 of 4 3.01Up
Larval carcass424 ± 194 of 4 2.06Up
S2 cells (growing)404 ± 64 of 4 1.96Up
Whole fly206 ± 64 of 4

Looking for CG32566-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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