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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32576-RA through 18771 annotations produced 1 hits



(CG32576):

Annotation Number : CG32576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052576
Gbrowse : chrX:16179983-16182520 (-) // 100.0 //
Probeset : 1628409_at
Accessions : protein= NP_001014746; /// NP_727945;, nucleotide= NM_001014746; /// NM_167492;
FlyMine data for FBgn0052576.
BDGP gene expression has embryonic in situ data for CG32576: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0052576 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 34 of 4 0.90None
Head31 ± 24 of 4 1.10None
Eye38 ± 34 of 4 1.31None
Thoracicoabdominal ganglion43 ± 44 of 4 1.50Up
Salivary gland87 ± 114 of 4 2.94Up
Crop35 ± 14 of 4 1.20None
Midgut56 ± 94 of 4 1.90None
Tubule18 ± 11 of 4 0.60Down
Hindgut43 ± 14 of 4 1.50Up
Heart27 ± 24 of 4 0.93None
Fat body39 ± 114 of 4 1.33None
Ovary15 ± 13 of 4 0.50Down
Testis4 ± 00 of 4 0.20Down
Male accessory glands41 ± 44 of 4 1.40None
Virgin spermatheca56 ± 24 of 4 1.92Up
Mated spermatheca55 ± 54 of 4 1.86Up
Adult carcass54 ± 44 of 4 1.80Up
Larval CNS26 ± 24 of 4 0.89None
Larval Salivary gland45 ± 54 of 4 1.54Up
Larval midgut53 ± 14 of 4 1.81Up
Larval tubule28 ± 34 of 4 0.90None
Larval hindgut33 ± 34 of 4 1.12None
Larval fat body23 ± 42 of 4 0.80None
Larval trachea19 ± 34 of 4 0.66Down
Larval carcass51 ± 54 of 4 1.74Up
S2 cells (growing)16 ± 14 of 4 0.55Down
Whole fly29 ± 24 of 4

Looking for CG32576-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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