FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32577-RA through 18771 annotations produced 2 hits

disco-related (disco-r):

Annotation Number : S.CX001785
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042650
Gbrowse : chrX:16018181-16029014 (-) // 100.0 //
Probeset : 1636916_at
Accessions : protein= NP_727938;, nucleotide= NM_167487;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0042650.
TRiP has 1 RNAi stocks for FBgn0042650 available for purchase.
VDRC has 3 RNAi stocks for FBgn0042650 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 0	0 of 4	1.80	None
Head	4 ± 2	0 of 4	1.00	None
Eye	2 ± 1	0 of 4	0.59	None
Thoracicoabdominal ganglion	4 ± 0	0 of 4	1.10	None
Salivary gland	11 ± 7	0 of 4	2.62	None
Crop	8 ± 1	0 of 4	2.00	None
Midgut	12 ± 2	0 of 4	2.80	None
Tubule	4 ± 0	0 of 4	1.00	None
Hindgut	6 ± 2	1 of 4	1.50	None
Heart	2 ± 1	0 of 4	0.55	None
Fat body	5 ± 3	0 of 4	1.34	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	3 ± 1	1 of 4	0.70	None
Male accessory glands	7 ± 1	0 of 4	1.70	None
Virgin spermatheca	4 ± 1	0 of 4	0.93	None
Mated spermatheca	6 ± 0	0 of 4	1.46	None
Adult carcass	6 ± 2	0 of 4	1.40	None
Larval CNS	5 ± 1	0 of 4	1.34	None
Larval Salivary gland	5 ± 1	0 of 4	1.36	None
Larval midgut	6 ± 2	0 of 4	1.53	None
Larval tubule	7 ± 2	0 of 4	1.60	None
Larval hindgut	4 ± 0	0 of 4	0.98	None
Larval fat body	8 ± 2	0 of 4	1.90	None
Larval trachea	2 ± 1	0 of 4	0.47	None
Larval carcass	6 ± 0	0 of 4	1.53	None
S2 cells (growing)	3 ± 0	0 of 4	0.78	None
Whole fly	4 ± 1	0 of 4

():

Annotation Number : CG32577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:16012335-16017227 (-) // 100.0 //
Probeset : 1623846_at
Accessions : protein= NP_727938;, nucleotide= NM_167487;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
BioGrid reports that CG32577 interacts with CG9908 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	58 ± 8	4 of 4	2.10	Up
Head	89 ± 3	4 of 4	3.20	Up
Eye	36 ± 3	4 of 4	1.32	None
Thoracicoabdominal ganglion	30 ± 2	4 of 4	1.10	None
Salivary gland	14 ± 8	2 of 4	0.53	None
Crop	114 ± 4	4 of 4	4.10	Up
Midgut	29 ± 3	4 of 4	1.10	None
Tubule	8 ± 0	2 of 4	0.30	Down
Hindgut	85 ± 2	4 of 4	3.10	Up
Heart	42 ± 3	4 of 4	1.54	Up
Fat body	21 ± 4	4 of 4	0.77	None
Ovary	8 ± 1	3 of 4	0.30	Down
Testis	12 ± 1	4 of 4	0.50	Down
Male accessory glands	32 ± 3	4 of 4	1.20	None
Virgin spermatheca	12 ± 1	4 of 4	0.44	Down
Mated spermatheca	11 ± 1	3 of 4	0.41	Down
Adult carcass	37 ± 2	4 of 4	1.40	Up
Larval CNS	121 ± 13	4 of 4	4.39	Up
Larval Salivary gland	10 ± 2	0 of 4	0.37	Down
Larval midgut	56 ± 5	4 of 4	2.05	Up
Larval tubule	10 ± 0	4 of 4	0.40	Down
Larval hindgut	280 ± 8	4 of 4	10.12	Up
Larval fat body	4 ± 1	0 of 4	0.20	Down
Larval trachea	11 ± 2	2 of 4	0.41	Down
Larval carcass	36 ± 2	4 of 4	1.32	None
S2 cells (growing)	2 ± 0	0 of 4	0.09	Down
Whole fly	27 ± 3	4 of 4

Looking for CG32577-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720