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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3258-RA through 18771 annotations produced 1 hits



chrX:354532-357219 (+) // 100.0 // (Asense):

Annotation Number : CG3258
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635124_at
Accessions : protein= , nucleotide= NP_476694;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
FlyMine data for full length.
BioGrid reports that CG3258 interacts with CG3758 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head3 ± 00 of 4 0.50Down
Eye0 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland14 ± 52 of 4 2.17None
Crop7 ± 13 of 4 1.10None
Midgut5 ± 11 of 4 0.80None
Tubule6 ± 00 of 4 0.90None
Hindgut6 ± 00 of 4 0.90None
Heart4 ± 10 of 4 0.60None
Fat body11 ± 33 of 4 1.67None
Ovary4 ± 11 of 4 0.60None
Testis2 ± 11 of 4 0.40Down
Male accessory glands6 ± 20 of 4 1.00None
Virgin spermatheca6 ± 00 of 4 0.89None
Mated spermatheca6 ± 02 of 4 0.91None
Adult carcass8 ± 40 of 4 1.20None
Larval CNS508 ± 764 of 473.91Up
Larval Salivary gland5 ± 11 of 4 0.81None
Larval midgut5 ± 01 of 4 0.85None
Larval tubule7 ± 12 of 4 1.10None
Larval hindgut4 ± 10 of 4 0.62None
Larval fat body7 ± 21 of 4 1.10None
Larval trachea2 ± 11 of 4 0.40Down
Larval carcass7 ± 02 of 4 1.03None
S2 cells (growing)3 ± 02 of 4 0.55None
Whole fly6 ± 11 of 4

Looking for CG3258-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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