Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32589-RA through 18771 annotations produced 2 hits



drop-dead (drd):

Annotation Number : CG5652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260006
Gbrowse : chrX:15027198-15030917 (+) // 100.0 //
Probeset : 1638195_at
Accessions : protein= NP_001033845;, nucleotide= NM_001038756;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : "0016747 // transferase activity
FlyMine data for FBgn0260006.
VDRC has 2 RNAi stocks for FBgn0260006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 14 of 4 0.80None
Head55 ± 04 of 4 1.30None
Eye51 ± 34 of 4 1.17None
Thoracicoabdominal ganglion39 ± 24 of 4 0.90None
Salivary gland34 ± 32 of 4 0.79None
Crop470 ± 174 of 410.70Up
Midgut10 ± 21 of 4 0.20Down
Tubule11 ± 00 of 4 0.30Down
Hindgut428 ± 104 of 4 9.70Up
Heart14 ± 32 of 4 0.33Down
Fat body25 ± 43 of 4 0.59Down
Ovary29 ± 34 of 4 0.70None
Testis14 ± 14 of 4 0.30Down
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca17 ± 13 of 4 0.40Down
Mated spermatheca25 ± 63 of 4 0.57None
Adult carcass37 ± 33 of 4 0.80None
Larval CNS12 ± 33 of 4 0.27Down
Larval Salivary gland19 ± 21 of 4 0.44Down
Larval midgut17 ± 31 of 4 0.40Down
Larval tubule10 ± 10 of 4 0.20Down
Larval hindgut827 ± 604 of 418.77Up
Larval fat body16 ± 13 of 4 0.40Down
Larval trachea285 ± 374 of 4 6.49Up
Larval carcass72 ± 94 of 4 1.64None
S2 cells (growing)4 ± 10 of 4 0.10Down
Whole fly44 ± 54 of 4



drop-dead (drd):

Annotation Number : CG32589
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260006
Gbrowse : chrX:15019787-15020608 (+) // 100.0 //
Probeset : 1634198_at
Accessions : protein= NP_001033845;, nucleotide= NM_001038756;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : "0016747 // transferase activity
FlyMine data for FBgn0260006.
VDRC has 2 RNAi stocks for FBgn0260006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 03 of 4 1.00None
Head8 ± 23 of 4 1.30None
Eye6 ± 10 of 4 0.91None
Thoracicoabdominal ganglion6 ± 11 of 4 1.00None
Salivary gland13 ± 30 of 4 2.02None
Crop49 ± 34 of 4 7.50Up
Midgut8 ± 03 of 4 1.30None
Tubule7 ± 11 of 4 1.10None
Hindgut48 ± 54 of 4 7.30Up
Heart6 ± 10 of 4 0.96None
Fat body8 ± 13 of 4 1.32None
Ovary3 ± 02 of 4 0.50None
Testis4 ± 00 of 4 0.70None
Male accessory glands10 ± 20 of 4 1.50None
Virgin spermatheca6 ± 11 of 4 0.95None
Mated spermatheca5 ± 10 of 4 0.82None
Adult carcass11 ± 11 of 4 1.70Up
Larval CNS4 ± 04 of 4 0.70None
Larval Salivary gland8 ± 10 of 4 1.22None
Larval midgut8 ± 11 of 4 1.21None
Larval tubule8 ± 04 of 4 1.20None
Larval hindgut48 ± 84 of 4 7.37Up
Larval fat body4 ± 10 of 4 0.70None
Larval trachea20 ± 54 of 4 3.12Up
Larval carcass5 ± 00 of 4 0.90None
S2 cells (growing)6 ± 01 of 4 0.93None
Whole fly6 ± 11 of 4

Looking for CG32589-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime