FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG32604-RA through 18771 annotations produced 1 hits

lethal (1) G0007 (l(1)G0007):

Annotation Number : CG32604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026713
Gbrowse : chrX:14095404-14118761 (+) // 100.0 //
Probeset : 1623333_a_at
Accessions : protein= NP_572947; /// NP_727764;, nucleotide= NM_132719; /// NM_167396;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0002121 // inter-male aggressive behavior // inf
FlyMine data for FBgn0026713.
VDRC has 5 RNAi stocks for FBgn0026713 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	68 ± 2	4 of 4	1.20	Up
Head	40 ± 3	4 of 4	0.70	Down
Eye	56 ± 3	4 of 4	1.03	None
Thoracicoabdominal ganglion	58 ± 1	4 of 4	1.10	None
Salivary gland	71 ± 5	4 of 4	1.30	Up
Crop	75 ± 2	4 of 4	1.40	Up
Midgut	44 ± 1	4 of 4	0.80	None
Tubule	60 ± 8	4 of 4	1.10	None
Hindgut	56 ± 0	4 of 4	1.00	None
Heart	41 ± 1	4 of 4	0.76	Down
Fat body	40 ± 6	4 of 4	0.73	Down
Ovary	72 ± 1	4 of 4	1.30	Up
Testis	27 ± 1	4 of 4	0.50	Down
Male accessory glands	113 ± 1	4 of 4	2.10	Up
Virgin spermatheca	45 ± 3	4 of 4	0.82	None
Mated spermatheca	50 ± 5	4 of 4	0.91	None
Adult carcass	55 ± 3	4 of 4	1.00	None
Larval CNS	109 ± 9	4 of 4	1.98	Up
Larval Salivary gland	165 ± 11	4 of 4	3.00	Up
Larval midgut	72 ± 3	4 of 4	1.31	Up
Larval tubule	52 ± 1	4 of 4	1.00	None
Larval hindgut	77 ± 7	4 of 4	1.40	Up
Larval fat body	50 ± 7	4 of 4	0.90	None
Larval trachea	112 ± 5	4 of 4	2.04	Up
Larval carcass	90 ± 1	4 of 4	1.63	Up
S2 cells (growing)	203 ± 8	4 of 4	3.70	Up
Whole fly	55 ± 3	4 of 4

Looking for CG32604-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720