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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32638-RA through 18771 annotations produced 1 hits


Annotation Number : CG32638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052638
Gbrowse : chrX:13017031-13022827 (-) // 100.0 //
Probeset : 1634787_at
Accessions : protein= NP_727668;, nucleotide= NM_167348;
FlyMine data for FBgn0052638.
BioGrid reports that CG32638 interacts with CG3642 CG9195 .
VDRC has 1 RNAi stocks for FBgn0052638 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 84 of 4 1.60Up
Head246 394 of 4 1.90None
Eye569 144 of 4 4.32Up
Thoracicoabdominal ganglion157 94 of 4 1.20None
Salivary gland1284 524 of 4 9.74Up
Crop310 124 of 4 2.40Up
Midgut240 44 of 4 1.80Up
Tubule136 34 of 4 1.00None
Hindgut460 84 of 4 3.50Up
Heart279 104 of 4 2.12Up
Fat body125 254 of 4 0.95None
Ovary107 64 of 4 0.80None
Testis148 74 of 4 1.10None
Male accessory glands137 94 of 4 1.00None
Virgin spermatheca48 24 of 4 0.37Down
Mated spermatheca54 34 of 4 0.41Down
Adult carcass179 164 of 4 1.40None
Larval CNS105 134 of 4 0.80None
Larval Salivary gland481 404 of 4 3.65Up
Larval midgut231 164 of 4 1.75Up
Larval tubule552 154 of 4 4.20Up
Larval hindgut458 174 of 4 3.47Up
Larval fat body95 44 of 4 0.70Down
Larval trachea292 354 of 4 2.22Up
Larval carcass273 144 of 4 2.07Up
S2 cells (growing)542 134 of 4 4.12Up
Whole fly131 94 of 4

Looking for CG32638-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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