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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32641-RA through 18771 annotations produced 1 hits



/// (CG32640 /// CG32641):

Annotation Number : CG32641
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052640 /// FBgn0052641
Gbrowse : chrX:13078607-13079006 (+) // 100.0 // /// chrX:13072134-13072533 (+) // 100.0 // /// chrUextra:220564-220963 (-) // 100.0 //
Probeset : 1630842_s_at
Accessions : protein= NP_727674; /// NP_727675;, nucleotide= NM_167351; /// NM_167352;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0052640 /// FBgn0052641.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 ± 44 of 4 0.50Down
Head334 ± 84 of 4 2.00Up
Eye341 ± 354 of 4 2.03Up
Thoracicoabdominal ganglion92 ± 24 of 4 0.60Down
Salivary gland733 ± 294 of 4 4.36Up
Crop1029 ± 224 of 4 6.10Up
Midgut361 ± 34 of 4 2.10Up
Tubule673 ± 594 of 4 4.00Up
Hindgut443 ± 84 of 4 2.60Up
Heart400 ± 204 of 4 2.38Up
Fat body401 ± 294 of 4 2.39Up
Ovary163 ± 34 of 4 1.00None
Testis46 ± 24 of 4 0.30Down
Male accessory glands370 ± 144 of 4 2.20Up
Virgin spermatheca585 ± 164 of 4 3.48Up
Mated spermatheca583 ± 314 of 4 3.47Up
Adult carcass306 ± 94 of 4 1.80Up
Larval CNS280 ± 254 of 4 1.67Up
Larval Salivary gland453 ± 204 of 4 2.69Up
Larval midgut158 ± 64 of 4 0.94None
Larval tubule609 ± 164 of 4 3.60Up
Larval hindgut328 ± 184 of 4 1.95Up
Larval fat body398 ± 474 of 4 2.40Up
Larval trachea449 ± 194 of 4 2.67Up
Larval carcass294 ± 154 of 4 1.75Up
S2 cells (growing)258 ± 24 of 4 1.54Up
Whole fly168 ± 94 of 4

Looking for CG32641-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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