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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32643-RA through 18771 annotations produced 1 hits



(CG32643):

Annotation Number : CG32643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052643
Gbrowse : chrX:12878589-12879238 (+) // 100.0 //
Probeset : 1624584_at
Accessions : protein= NP_727655;, nucleotide= NM_167345;
FlyMine data for FBgn0052643.
VDRC has 3 RNAi stocks for FBgn0052643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye4 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland13 ± 60 of 4 0.23Down
Crop6 ± 20 of 4 0.10Down
Midgut15 ± 10 of 4 0.30Down
Tubule7 ± 10 of 4 0.10Down
Hindgut8 ± 10 of 4 0.20Down
Heart4 ± 00 of 4 0.08Down
Fat body8 ± 20 of 4 0.15Down
Ovary4 ± 00 of 4 0.10Down
Testis576 ± 264 of 410.10Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca9 ± 00 of 4 0.17Down
Mated spermatheca5 ± 10 of 4 0.09Down
Adult carcass16 ± 40 of 4 0.30Down
Larval CNS6 ± 10 of 4 0.11Down
Larval Salivary gland7 ± 10 of 4 0.13Down
Larval midgut9 ± 30 of 4 0.16Down
Larval tubule7 ± 00 of 4 0.10Down
Larval hindgut8 ± 00 of 4 0.15Down
Larval fat body40 ± 142 of 4 0.70None
Larval trachea9 ± 50 of 4 0.17Down
Larval carcass5 ± 10 of 4 0.09Down
S2 cells (growing)5 ± 00 of 4 0.10Down
Whole fly57 ± 24 of 4

Looking for CG32643-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime