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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32656-RA through 18771 annotations produced 1 hits



Mucin 11A /// GCR(ich) (Muc11A /// TwdlT):

Annotation Number : CG32656
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052656
Gbrowse : chrX:11953833-11959180 (+) // 100.0 //
Probeset : 1636501_at
Accessions : protein= NP_727593;, nucleotide= NM_167319;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0052656.
BDGP gene expression has embryonic in situ data for CG32656: 8 pix of staining in 4 body parts.
Homophila reports that CG32656 is a close match (4e-12) to human gene BSSL;CEL;CELL;MODY8 (NP_001798), a gene associated with Maturity-onset diabetes of the young, type VIII, 609812 (3).
VDRC has 5 RNAi stocks for FBgn0052656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland12 ± 40 of 4 0.01Down
Crop3 ± 10 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule7894 ± 3054 of 4 6.60Up
Hindgut2 ± 10 of 4 0.00Down
Heart86 ± 234 of 4 0.07Down
Fat body300 ± 5482 of 4 0.25Down
Ovary5 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 30 of 4 0.00Down
Virgin spermatheca62 ± 571 of 4 0.05Down
Mated spermatheca8 ± 61 of 4 0.01Down
Adult carcass83 ± 493 of 4 0.10Down
Larval CNS3 ± 41 of 4 0.00Down
Larval Salivary gland5 ± 10 of 4 0.00Down
Larval midgut4 ± 20 of 4 0.00Down
Larval tubule7150 ± 2354 of 4 5.90Up
Larval hindgut307 ± 174 of 4 0.26Down
Larval fat body194 ± 1123 of 4 0.20Down
Larval trachea27 ± 341 of 4 0.02Down
Larval carcass19 ± 33 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly1204 ± 624 of 4

Looking for CG32656-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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