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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32669-RA through 18771 annotations produced 1 hits



(CG32669):

Annotation Number : CG32669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052669
Gbrowse : chrX:10737137-10739114 (-) // 100.0 //
Probeset : 1623556_at
Accessions : protein= NP_727460;, nucleotide= NM_167256;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // non-traceable author s
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity /
FlyMine data for FBgn0052669.
Homophila reports that CG32669 is a close match (3e-82) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 2 RNAi stocks for FBgn0052669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.20Down
Head5 ± 00 of 4 0.20Down
Eye4 ± 10 of 4 0.11Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland10 ± 20 of 4 0.28Down
Crop5 ± 11 of 4 0.20Down
Midgut179 ± 124 of 4 5.00Up
Tubule518 ± 734 of 414.60Up
Hindgut144 ± 104 of 4 4.10Up
Heart9 ± 13 of 4 0.27Down
Fat body15 ± 34 of 4 0.43Down
Ovary3 ± 00 of 4 0.10Down
Testis4 ± 12 of 4 0.10Down
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.04Down
Mated spermatheca5 ± 10 of 4 0.14Down
Adult carcass16 ± 22 of 4 0.50Down
Larval CNS4 ± 11 of 4 0.12Down
Larval Salivary gland5 ± 20 of 4 0.15Down
Larval midgut238 ± 154 of 4 6.69Up
Larval tubule102 ± 24 of 4 2.90Up
Larval hindgut102 ± 134 of 4 2.88Up
Larval fat body4 ± 20 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.11Down
Larval carcass18 ± 04 of 4 0.53Down
S2 cells (growing)3 ± 10 of 4 0.09Down
Whole fly35 ± 44 of 4

Looking for CG32669-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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