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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32672-RA through 18771 annotations produced 1 hits

Autophagy-specific gene 8a (Atg8a):

Annotation Number : CG32672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052672
Gbrowse : chrX:10658900-10662368 (-) // 100.0 //
Probeset : 1639467_at
Accessions : protein= NP_727447;, nucleotide= NM_167245;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052672.
BDGP gene expression has embryonic in situ data for CG32672: 4 pix of staining in 1 body parts.
BioGrid reports that CG32672 interacts with CG3918 CG5064 CG6838 CG7885 .
TRiP has 2 RNAi stocks for FBgn0052672 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052672 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2032 374 of 4 1.20Up
Head2328 504 of 4 1.40Up
Eye3755 214 of 4 2.31Up
Thoracicoabdominal ganglion2483 404 of 4 1.50Up
Salivary gland6446 2454 of 4 3.96Up
Crop3036 954 of 4 1.90Up
Midgut2452 514 of 4 1.50Up
Tubule2259 694 of 4 1.40Up
Hindgut2712 234 of 4 1.70Up
Heart3715 1194 of 4 2.28Up
Fat body2906 1604 of 4 1.79Up
Ovary1078 334 of 4 0.70Down
Testis824 334 of 4 0.50Down
Male accessory glands4099 844 of 4 2.50Up
Virgin spermatheca2616 424 of 4 1.61Up
Mated spermatheca2349 734 of 4 1.44Up
Adult carcass2816 364 of 4 1.70Up
Larval CNS1336 404 of 4 0.82Down
Larval Salivary gland2714 704 of 4 1.67Up
Larval midgut3403 1954 of 4 2.09Up
Larval tubule3522 444 of 4 2.20Up
Larval hindgut2499 1184 of 4 1.53Up
Larval fat body3428 4104 of 4 2.10Up
Larval trachea2379 3224 of 4 1.46Up
Larval carcass2514 2194 of 4 1.54Up
S2 cells (growing)1690 334 of 4 1.04None
Whole fly1628 354 of 4

Looking for CG32672-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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