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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32679-RA through 18771 annotations produced 1 hits



(CG32679):

Annotation Number : CG32679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052679
Gbrowse : chrX:10260542-10261706 (-) // 100.0 //
Probeset : 1629460_at
Accessions : protein= NP_727412;, nucleotide= NM_167225;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0052679.
VDRC has 2 RNAi stocks for FBgn0052679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.70None
Head3 ± 10 of 4 0.90None
Eye3 ± 00 of 4 0.79None
Thoracicoabdominal ganglion6 ± 00 of 4 1.50None
Salivary gland12 ± 40 of 4 2.73None
Crop4 ± 10 of 4 1.00None
Midgut8 ± 10 of 4 2.00None
Tubule5 ± 10 of 4 1.30None
Hindgut6 ± 10 of 4 1.40None
Heart3 ± 21 of 4 0.87None
Fat body9 ± 20 of 4 2.20Up
Ovary1 ± 00 of 4 0.30None
Testis3 ± 10 of 4 0.90None
Male accessory glands8 ± 20 of 4 2.00None
Virgin spermatheca9 ± 00 of 4 2.15Up
Mated spermatheca8 ± 10 of 4 1.88None
Adult carcass9 ± 60 of 4 2.10None
Larval CNS2 ± 20 of 4 0.62None
Larval Salivary gland62 ± 94 of 414.37Up
Larval midgut14 ± 01 of 4 3.20Up
Larval tubule5 ± 20 of 4 1.20None
Larval hindgut5 ± 10 of 4 1.29None
Larval fat body7 ± 20 of 4 1.60None
Larval trachea3 ± 10 of 4 0.77None
Larval carcass4 ± 10 of 4 0.98None
S2 cells (growing)5 ± 00 of 4 1.18None
Whole fly4 ± 10 of 4

Looking for CG32679-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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